RNA id: TU584416


Basic Information

Item Value
RNA id TU584416
length 1463
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G515190
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48595518 ~ 48619629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTGCATTGACACATTTGTCCTTGACATCTATCCACACTGAGTCGGCAACCAGCTCAGGTGTCTTCTCCCCATGCAGTATGTAGTAGACTAGCAGGCGTATCGATGGCACCATGTCTGAGGTCACTGTGAAACTAATGGCTTGGGAACCTGTACCTTGGAGACGCTTTTCAGAAGCAAACTTCACTATCTTACCCCTCGAGATGATCTGGCATAGAAGTCAGATGGGTAGGTCAGGAAGAGGTAAATTGTTAGAATTACAgaacattttaaattatttttttgttttgttatattactttttttttacagaaatctttttattttttactttgacctaatggggtattatgtgtagatcagtgacaacaAATCCCaaataaatcattttaaattccacttggtaacaaaacaaaatgtgaaaaagccCAAGAGGGGTGCATACTTATTATAGGCACAGTATGACTAGAAAACTAACATCACTTACCTGGTAGCTGAAAGTCTCAATTCGGAGGTAGCTGCGAGCATGGAAGTAGATTTGAATGCTGACATGTTGTCCAACTTGAAGGCCGGAGTAATCGGACGGCAAATCAATGTACAAGTAGCGTTCGTTGGGGGACGAGTATGCCTTGGCTTCAAGTGTATATTCCGCTTGACTACCGAAGGGTAACCTCTCATCAGCAGTCTTGAACTGAAAAATAAAACTTGCACTCTCGGCTTCAGAATGAAGGTTGCAAATAAAAAGAGCAATCCCATCGTCCTTGGTCCTCTTACTGTTATCCACTGTCAGTGTAGGACACTGAAGTTTTTCATCTACACCAAGTTTGTTTTTGATGAAGGAATTCACCAACTTCACTGGTACCAATGCCACAGGTTCCCCCAAGTGGTCCTTGACTGACACCCTGATAGCGTATGGCAGTCCTGGTTTGATGAAAGGAGGAGTAGCGACAAGACTCAGTCTGTACGGGGACTTTAGGAACTTCACATTGACCATCTCAGCTTCCTGGGAGATACCACCTAGAGAGATTAAAAATAACCTTGTCTGATCAAAAATAGAGTAATAATATGTTCCTGCTAAACTAAATGATGCAATCATTTTGCAATAATGGAATGATCTTCTTTGAATGATCAATCAAACTCTAGGTCAAAGTGAGCTAATCTTAGATGCATTACTATTGTTTAAATGGATAGGCCTAATGGAGCTGATTTTTTTTTATAGAGTATGTATTTTGGCATcaatactgtagatatgtgtatAACAAGGGGGGCCTACACTGTGCGTCTCTCACCAGTTGGCTCTTGTACCATCACAGCCAAATACAGGAACTTTTCCACCATCCCTTCCAGCTCTTTGGGTCCATCTTCAAGTGATAGAGCTTTCTTCATGTTTATGCACACCTCCACGTCACCACTTTCTGTCATCTGAAAAGTTTGATCACAATTTTGCTTAAAAACCCCAGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584413 lncRNA upstream 7630 48532377 ~ 48587888 (+) False G515189
TU584407 lncRNA upstream 12319 48574958 ~ 48583199 (+) False G515189
TU584409 lncRNA upstream 12319 48574958 ~ 48583199 (+) True G515189
TU584365 lncRNA upstream 263526 48331667 ~ 48331992 (+) True G515153
TU584349 lncRNA upstream 276294 48318887 ~ 48319224 (+) True G515137
TU584543 lncRNA downstream 55255 48674884 ~ 48675558 (+) True G515308
TU584589 lncRNA downstream 104865 48724494 ~ 48724744 (+) True G515346
TU584696 lncRNA downstream 275288 48894917 ~ 48895566 (+) True G515446
TU584697 lncRNA downstream 276048 48895677 ~ 48896770 (+) True G515447
TU584710 lncRNA downstream 279467 48899096 ~ 48899301 (+) True G515460
XM_036980322.1 mRNA upstream 66760 48419773 ~ 48528758 (+) False cntrl
XM_036980324.1 mRNA upstream 66760 48419773 ~ 48528758 (+) False cntrl
XM_036980323.1 mRNA upstream 66760 48419825 ~ 48528758 (+) True cntrl
XM_036980311.1 mRNA upstream 202511 48387256 ~ 48393007 (+) False LOC110526080
XM_021606673.2 mRNA downstream 329363 48948992 ~ 49034090 (+) False LOC110526072
XM_021606674.2 mRNA downstream 343930 48963559 ~ 49034090 (+) False LOC110526072
XM_021606672.2 mRNA downstream 442821 49062450 ~ 49063259 (+) True cmlc1
XM_021606671.2 mRNA downstream 457028 49076657 ~ 49134305 (+) True qsox2
XM_021606668.2 mRNA downstream 526498 49146127 ~ 49156002 (+) True LOC110526069
TU584412 other upstream 7630 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 643264 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1078808 47513786 ~ 47516710 (+) True LOC118964881
TU583803 other upstream 1266274 47303183 ~ 47329244 (+) True G514662
TU585107 other downstream 328988 48948617 ~ 48954291 (+) False LOC110526072
TU585255 other downstream 564244 49183873 ~ 49187323 (+) True edf1
TU585185 other downstream 613950 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 685496 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 766885 49386514 ~ 49387212 (+) False LOC118964898

Expression Profile