RNA id: TU585285


Basic Information

Item Value
RNA id TU585285
length 902
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G515985
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49229169 ~ 49230070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaatgacatttattgaatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagccccctcaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcacattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatatttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttacattttggtttcatctgaccagagcatcttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctctggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggactcttggctgcatctctgatcagtcttctccttgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585177 lncRNA upstream 66709 49161794 ~ 49162460 (+) True G515897
TU585221 lncRNA upstream 120554 49108346 ~ 49108615 (+) True G515932
TU585102 lncRNA upstream 191627 49033823 ~ 49037542 (+) True LOC110526072
TU585116 lncRNA upstream 270777 48957890 ~ 48958392 (+) True G515839
TU585113 lncRNA upstream 273748 48955109 ~ 48955421 (+) True G515836
TU585286 lncRNA downstream 2441 49232511 ~ 49232995 (+) True G515986
TU585186 lncRNA downstream 3509 49233579 ~ 49260632 (+) False LOC110526066
TU585187 lncRNA downstream 12140 49242210 ~ 49246453 (+) True LOC110526066
TU585306 lncRNA downstream 40544 49270614 ~ 49290474 (+) True G516006
TU585316 lncRNA downstream 53645 49283715 ~ 49335105 (+) True G516012
XM_036980343.1 mRNA upstream 39362 49188175 ~ 49189807 (+) True LOC118964897
XM_021604927.2 mRNA upstream 41835 49183291 ~ 49187334 (+) False edf1
XM_021604928.2 mRNA upstream 41835 49183861 ~ 49187334 (+) False edf1
NM_001124502.1 mRNA upstream 42459 49184189 ~ 49186710 (+) False edf1
XM_021606668.2 mRNA upstream 73167 49146127 ~ 49156002 (+) True LOC110526069
XR_005052142.1 mRNA downstream 11969 49242039 ~ 49246500 (+) False LOC110526066
XR_005052148.1 mRNA downstream 72595 49302665 ~ 49303356 (+) True LOC118964903
XM_036980345.1 mRNA downstream 131960 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA downstream 131961 49362031 ~ 49365894 (+) False LOC118964898
XM_036980364.1 mRNA downstream 288522 49518592 ~ 49522715 (+) True LOC118936463
TU585255 other upstream 41846 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 274878 48948617 ~ 48954291 (+) False LOC110526072
TU584412 other upstream 641281 48551619 ~ 48587888 (+) False G515189
TU584269 other upstream 1276915 47950006 ~ 47952254 (+) True G515069
TU583904 other upstream 1712459 47513786 ~ 47516710 (+) True LOC118964881
TU585185 other downstream 3509 49233579 ~ 49246453 (+) False LOC110526066
TU585313 other downstream 75055 49305125 ~ 49307140 (+) True G516011
TU585370 other downstream 156444 49386514 ~ 49387212 (+) False LOC118964898
TU585910 other downstream 519118 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1490331 50720401 ~ 50735236 (+) True LOC118964907

Expression Profile