RNA id: TU585431


Basic Information

Item Value
RNA id TU585431
length 293
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G516101
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49568096 ~ 49592137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagacttgtcccaaatccactcctgcattgtcttggctgtgtgcttagggtcgttgtcctgttggaaggtgaacctctggagcaggttttcatcaaggatctctgtactttgctccgttcatctttcccaggATCctgattcaggccaaagagttcaatctcggtatcatcagatcagagaatattgtttctcataccCTTCCCCCAGGTCtgtgtttctttccaaatcatgtccaatcaattgaatttaccacaggactccaaacaagttgtagaaacatctcaaggatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585420 lncRNA upstream 329 49557969 ~ 49567767 (+) True G516093
TU585416 lncRNA upstream 2764 49547981 ~ 49565332 (+) True G516089
TU585346 lncRNA upstream 62013 49503532 ~ 49506083 (+) True G516029
TU585375 lncRNA upstream 156162 49366819 ~ 49411934 (+) True G516050
TU585368 lncRNA upstream 180884 49386697 ~ 49387212 (+) True LOC118964898
TU585336 lncRNA downstream 8139 49600276 ~ 49604284 (+) False G516025
TU585333 lncRNA downstream 52768 49644905 ~ 49645732 (+) True G516025
TU585838 lncRNA downstream 76112 49668249 ~ 49668546 (+) True G516441
TU585840 lncRNA downstream 77603 49669740 ~ 49669942 (+) True G516443
TU585889 lncRNA downstream 121448 49713585 ~ 49761610 (+) False G516489
XM_036981758.1 mRNA upstream 1457 49553029 ~ 49566639 (+) True LOC118965033
XM_036980364.1 mRNA upstream 45381 49518592 ~ 49522715 (+) True LOC118936463
XM_036980345.1 mRNA upstream 181345 49362030 ~ 49386751 (+) False LOC118964898
XM_036980344.1 mRNA upstream 202202 49362031 ~ 49365894 (+) False LOC118964898
XR_005052148.1 mRNA upstream 264740 49302665 ~ 49303356 (+) True LOC118964903
XM_021606690.2 mRNA downstream 82004 49674141 ~ 49747277 (+) True cfap77
XM_021606691.2 mRNA downstream 156651 49748788 ~ 49753260 (+) False barhl1a
XM_036981761.1 mRNA downstream 303711 49895848 ~ 49897364 (+) False spaca9
XM_036980378.1 mRNA downstream 356501 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA downstream 356501 49948638 ~ 50001016 (+) False grin1b
TU585370 other upstream 180884 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 260956 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 321643 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 380773 49183873 ~ 49187323 (+) True edf1
TU585107 other upstream 613805 48948617 ~ 48954291 (+) False LOC110526072
TU585910 other downstream 157051 49749188 ~ 49751749 (+) True barhl1a
TU586434 other downstream 1128264 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1319691 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2686356 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 3059803 52651940 ~ 52655297 (+) True G519603

Expression Profile