RNA id: TU585888


Basic Information

Item Value
RNA id TU585888
length 1925
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G516489
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49713585 ~ 49761610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acATATCAGATTTTattatttgcaaacagggacagtttcattacaaacaagacacactgattAGGCATTGGATAAACATGATAAGATGAACACATAGGTCtatctctgtccattcttagcctGTCATTTCAGTAATTTGTGTAGTATTACAAAAGATTCTGCTAAAATTGCAGAATTGAACTTTAATACATATGAAAATAAAAGCCCAAAAACGTCAACACCTGTATAGCATACCAATCAACCAACcatagcggcaggtagcctagtggttagagcgttgggccagtacccgaaatgttgctggatcgaatcccaagctgacaaggcaaagaaatttgtcgttctgcccctgaacaaggcagttaacccactgttccccggtaggccgtcattgtatataagaactgacttgcttagttaaataaaggttaaaaaaaagccTATTTGTAAGACTGTATTCACCTGGAAAAAGTAGCAATGTAAAAACACGTGAAAAGTTTTTAAAAGATCACACTTGTAATTTTCTTTTGTTTTATCGGAACAtgaggtcatattcactgagtataccaaacattaggaacaccttcctaatatagaGTTGCTTTTGACAGTTGTGTCAATTAAgcttggatgtcctttgggtggtggcgCATTCTTGATCCACATGGAAAAAGGTtaagcattaaaaaaaaacagcagcgttgcagttcttgacgccAACCAGTGCGCCCGGCACccaccatacccagttcaaaaggcacttcaatattttgtctggCCCATTCATCCACTGAATGGCTCACATACACAATCCctgtctcaattgtctaaaggcttaaaaatccttctttaacttgtctcctccccttcatctacactgattgaagtgacttcaataagggatcatagctttcacctctcatgtcatggaaagagcaggtgttcttaatgttttgtatacttatATGATTTCTGACATTCGGGAACATTTTAGATCGCATGAATGCATTTTGTTTCATTACCTTTATCACTTTCCATGATCTGGGTTTATTTTATGAAACAAATTCAACACCAAACATGTATTTTCAAAATTGAAAATGTTAATTTAAAGTCGTATCCACACAGATgtataccaacattcctatcgATGCAGTAGCTGAAAATACAATTCTGACATTCTGGAGAACAACTTTTTTACTCTTTTCATGAAACGGTGACATACTTAACTTGTGTCGACGTGATAGACCATGGTGCGTGGCTCACCATACAATTCATTATAAAATAATACACACAACCTGAGACTGTCAGTCTGTTCTGAACTGCTAAAGAAAAACACTATACTCACTATGTCAAGTTCTGCTGCCCCATACTTGGGGGTTTTGTGTCAAGCATGGCTCTGGGATCAATTCTGTAGAAACACAGTAATTGTGCAAAGGTAGAGGGTTAAACAGTTATGGTAAGGATGGAATTCACCCATCCTTAAGCTACACAACCAGCACAATCACAAATCAACCCCTAGAACCCCTTCACCCGTTCTAGGTGCACCATTTTAGATGAGAAGATACTGGGCGTAATGAATATCAAATGACAGATACTCCACCtaatctaaaaaaaaaagaagaaaaaaaaagggcTAGGTGGAGTTATTACCTTTTCAACTATAATTTGATCGGTTTAGATCTATGAGGGGCCGTCATAAACATGTCTAGACTATAGCTGCTAGGGACAAGAGATTGGTTTAGGAGTTAGGAGAGCTGTCCTGGGTAAGTGGGGATAACCTTTCAGCTATTCCACTCGGTCCTCCTCTCCGTTGGCTTggcttttcttcttcttcttctttttggctGCGGAGTCTCCATCAATCCCGCTGGCATATTCGGAGCGCGTGAGACTGGCCACTCGCTCTTCAGTGCTAAACTTCTTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU585840 lncRNA upstream 89696 49669740 ~ 49669942 (+) True G516443
TU585838 lncRNA upstream 91092 49668249 ~ 49668546 (+) True G516441
TU585333 lncRNA upstream 113906 49644905 ~ 49645732 (+) True G516025
TU585336 lncRNA upstream 155354 49600276 ~ 49604284 (+) False G516025
TU585431 lncRNA upstream 167501 49568096 ~ 49592137 (+) True G516101
TU586030 lncRNA downstream 134296 49895906 ~ 49896282 (+) True spaca9
TU586031 lncRNA downstream 135826 49897436 ~ 49899671 (+) True G516628
TU586056 lncRNA downstream 166799 49928409 ~ 49928968 (+) True G516649
TU586088 lncRNA downstream 174709 49936319 ~ 49936792 (+) True G516659
TU586090 lncRNA downstream 177336 49938946 ~ 49939253 (+) True G516661
XM_021606691.2 mRNA upstream 6378 49748788 ~ 49753260 (+) False barhl1a
XM_021606690.2 mRNA upstream 12361 49674141 ~ 49747277 (+) True cfap77
XM_036981758.1 mRNA upstream 192999 49553029 ~ 49566639 (+) True LOC118965033
XM_036980364.1 mRNA upstream 236923 49518592 ~ 49522715 (+) True LOC118936463
XM_036980345.1 mRNA upstream 372887 49362030 ~ 49386751 (+) False LOC118964898
XM_036981761.1 mRNA downstream 134238 49895848 ~ 49897364 (+) False spaca9
XM_036980378.1 mRNA downstream 187028 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA downstream 187028 49948638 ~ 50001016 (+) False grin1b
XM_036980380.1 mRNA downstream 187028 49948638 ~ 50001016 (+) True grin1b
XM_021606704.2 mRNA downstream 289594 50051204 ~ 50054481 (+) False kazald3
TU585910 other upstream 7889 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 372426 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 452498 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 513185 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 572315 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 958791 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1150218 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2516883 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2890330 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 4164332 53925942 ~ 53955130 (+) True G521552

Expression Profile