RNA id: TU586031


Basic Information

Item Value
RNA id TU586031
length 1647
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G516628
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49897436 ~ 49899671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATTTATATTCAGTTCATTTTTCCCCTTTTTGTTTTCAGAACATTTGTAAATCAGAACTGTCTTAACATACCGTCAGATTCACTGTACCATAGTTTCCTCATGCCGATGGTGTTTAACATTGATTTACATGCTTGACAACAAAAGATATGGGGAGAAAAAAGGAACACTTGAATTGACACCAGGATCTTGGACAGAGACCATGCTTTGAGGATAACAGCTGGAGATGGGTAATACTGACTTCCATGGATATGTGACTTAACTGACTAGCTTGCAAGCCCTGATCCTGAGTAGGGGATGGAACAATGATTGTCACCTTAGATGACAATTGACTATATGGCAACAGAAACTCACAATATGTCCATGTTAAGAACTACATTGTGACCTGATTCACTTTAAAGGCATTGAGTGAGGAAGGACCTCTATGAAGAGGGACATATACCTGGCATAGCTTCAATGCAAAGACATCAAGAGCGCCATCAGAGTCCCACTGCAGGAATTCTGGCAGTTGTGTGCAGCCATCAAGGCACTGAATATCCAAAAGAACAGTCCTCTCAGGCCTCTAGCCTAGACAAAAATAATGCAGTGATCCACATCAACTTGATCAATAAACCCCCAAAAAGCAAGATGGATGCCACGTGGCACATTTAACTCAAGAGAATGTATGAGAATTAACAAACTCTGGTCTAGGGTGTTATTGCACGTTCCTCCACTACTGCAGGAACACGACCTGAGCTAGAGATTTAGCTTAAACCTAGGCAAGATGCGTTATTGCTGTAAAACTTCATTGTATGGTGGGATCATGCCCATTCAATCAACAAGACAAAATAAAATTGTTACTTGATACTCTAAGCTCTCTTTAGCTGGTTATAAATTATAACTAATTATTGCAATAACTTTAGTACCTATTTGTAGAGCTATATGTGTTAAAACAAGAGGCACTCAGTGTTTTGGGGAGGGAAATGTGATGGAACAACCCAAAAAGTGTTCTGAAAAGCTGAGGCTGTGAGGCCTTTGACCAAGCAGCAAAAAAAACAAGATGAATCCATTTGAGAAAAGTATTGCACTTGTGAGTAGGACCCTCCGAACCCTACAGAAAGTTCAGGCCATTCTAGATTGGGGTGTGCCAAAACCATAAATAAATAGCTTATTAAAACATCTAACAAAAGATTCTTGCTCGTTTTCCTGTTGCTGTTATTCGTTTTACATCACACAGACCGACGTAGCCTCAATATATAGATTTACACACCCAATAGACGTTCTCTGTCGACTCGCTGCTCTCCTCACCGACGACCAGGCTGTGAGAGAGACTACTGAGCTGGGTGTCCTCATCCCCGTCACACTGGCTATCGCTTTTGTTGCAGAACAGCTCTCGGGCGTGCATTCCCAGGAAGCTCTTGGCACTGGGGTAGGTACCCACAGTGAAGGGGGTGCCAGCGGGGGATAGGGAAAGCGGAAAGGCGGCCAGGTGGgtaggggacatctctgacaggaGAGGGGGCTGTTTCAGACTGCCGTTGAGGGTCACCGAGGTAGTGGACTGAGCTCCACCCCCGGGTGGTAAAGTGCCTCCGTTGCCAGGCGGCCACGCTTGGGTGCGTCGGTCAGAGCTGCCCTGAGCAGTTGGCACAGTTCTGCTACTGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586030 lncRNA upstream 1154 49895906 ~ 49896282 (+) True spaca9
TU585889 lncRNA upstream 135826 49713585 ~ 49761610 (+) False G516489
TU585888 lncRNA upstream 135826 49759638 ~ 49761610 (+) True G516489
TU585840 lncRNA upstream 227494 49669740 ~ 49669942 (+) True G516443
TU585838 lncRNA upstream 228890 49668249 ~ 49668546 (+) True G516441
TU586056 lncRNA downstream 28738 49928409 ~ 49928968 (+) True G516649
TU586088 lncRNA downstream 36648 49936319 ~ 49936792 (+) True G516659
TU586090 lncRNA downstream 39275 49938946 ~ 49939253 (+) True G516661
TU586093 lncRNA downstream 41749 49941420 ~ 49941621 (+) True G516664
TU586103 lncRNA downstream 59641 49959312 ~ 49960013 (+) True G516674
XM_036981761.1 mRNA upstream 72 49895848 ~ 49897364 (+) False spaca9
XM_021606691.2 mRNA upstream 144176 49748788 ~ 49753260 (+) False barhl1a
XM_021606690.2 mRNA upstream 150159 49674141 ~ 49747277 (+) True cfap77
XM_036981758.1 mRNA upstream 330797 49553029 ~ 49566639 (+) True LOC118965033
XM_036980364.1 mRNA upstream 374721 49518592 ~ 49522715 (+) True LOC118936463
XM_036980378.1 mRNA downstream 48967 49948638 ~ 50001016 (+) False grin1b
XM_036980379.1 mRNA downstream 48967 49948638 ~ 50001016 (+) False grin1b
XM_036980380.1 mRNA downstream 48967 49948638 ~ 50001016 (+) True grin1b
XM_021606704.2 mRNA downstream 151533 50051204 ~ 50054481 (+) False kazald3
XM_021606703.2 mRNA downstream 151535 50051206 ~ 50054481 (+) False kazald3
TU585910 other upstream 145687 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 510224 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 590296 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 650983 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 710113 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 820730 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 1012157 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2378822 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2752269 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 4026271 53925942 ~ 53955130 (+) True G521552

Expression Profile