RNA id: TU586176


Basic Information

Item Value
RNA id TU586176
length 376
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G516745
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50092075 ~ 50092450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttaattatatgagctctatcacaaccctgtgactctcagatcaattcagtgtctatcaatgaattctctgagagtcccttacacattgcaactgagatcctttaatagcaaaagacacacatagccagacagcataggcataatttatcgttcagctttgtctcctaaactatgctttcttctcaaactcagaaccataaacaaatcctccatatcaacagccatatatcaaatccatcctatcttgacaagatcacagagacacactgactggcacacatacattgtggagccaagagatacacgcttgacctctcccctctctccggcccaagcaacttagtcttgacatagaacaggtactgcaaccccgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586175 lncRNA upstream 490 50091167 ~ 50091585 (+) True G516744
TU586165 lncRNA upstream 3067 50088684 ~ 50089008 (+) True G516734
TU586154 lncRNA upstream 42052 50049711 ~ 50050023 (+) True G516725
TU586129 lncRNA upstream 66299 50025517 ~ 50025776 (+) True G516700
TU586125 lncRNA upstream 78263 50013611 ~ 50013812 (+) True G516696
TU586179 lncRNA downstream 3758 50096208 ~ 50096449 (+) True G516748
TU586182 lncRNA downstream 9382 50101832 ~ 50102060 (+) True G516751
TU586156 lncRNA downstream 103778 50196228 ~ 50208464 (+) True LOC110526093
TU586357 lncRNA downstream 291556 50384006 ~ 50385057 (+) True G516918
TU586372 lncRNA downstream 341282 50433732 ~ 50433997 (+) True G516933
XM_021606710.2 mRNA upstream 5116 50072326 ~ 50086959 (+) False rsph14
XM_021606708.2 mRNA upstream 5116 50072350 ~ 50086959 (+) True rsph14
XM_021606704.2 mRNA upstream 37594 50051204 ~ 50054481 (+) False kazald3
XM_036980384.1 mRNA downstream 14342 50106792 ~ 50187218 (+) False LOC110526093
XM_036980385.1 mRNA downstream 14345 50106795 ~ 50197130 (+) False LOC110526093
XM_021606711.2 mRNA downstream 14346 50106796 ~ 50197130 (+) False LOC110526093
XM_036980383.1 mRNA downstream 14346 50106796 ~ 50197130 (+) False LOC110526093
XM_036980386.1 mRNA downstream 105892 50198342 ~ 50299370 (+) True si:dkey-220o5.5
TU585910 other upstream 340326 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 704863 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 784935 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 845622 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 904752 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 627951 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 819378 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2186043 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2559490 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3833492 53925942 ~ 53955130 (+) True G521552

Expression Profile