RNA id: TU586179


Basic Information

Item Value
RNA id TU586179
length 242
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G516748
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50096208 ~ 50096449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatcctttactcagtactttgtttgcacctttggcagcgattacggcATCGAGTATGaatctacaagcttggcacacctgtatttgggaaggttctcccattcttctctgtagatcctctcaagctcaggttggatggggagcgttgctgcacatgcattttcaggtctctccagagattttcgatcaggttcaagaatgggctctggctgagccactcaaggaccttcagagtcttgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586176 lncRNA upstream 3758 50092075 ~ 50092450 (+) True G516745
TU586175 lncRNA upstream 4623 50091167 ~ 50091585 (+) True G516744
TU586165 lncRNA upstream 7200 50088684 ~ 50089008 (+) True G516734
TU586154 lncRNA upstream 46185 50049711 ~ 50050023 (+) True G516725
TU586129 lncRNA upstream 70432 50025517 ~ 50025776 (+) True G516700
TU586182 lncRNA downstream 5383 50101832 ~ 50102060 (+) True G516751
TU586156 lncRNA downstream 99779 50196228 ~ 50208464 (+) True LOC110526093
TU586357 lncRNA downstream 287557 50384006 ~ 50385057 (+) True G516918
TU586372 lncRNA downstream 337283 50433732 ~ 50433997 (+) True G516933
TU586408 lncRNA downstream 377080 50473529 ~ 50506298 (+) True G516964
XM_021606710.2 mRNA upstream 9249 50072326 ~ 50086959 (+) False rsph14
XM_021606708.2 mRNA upstream 9249 50072350 ~ 50086959 (+) True rsph14
XM_021606704.2 mRNA upstream 41727 50051204 ~ 50054481 (+) False kazald3
XM_036980384.1 mRNA downstream 10343 50106792 ~ 50187218 (+) False LOC110526093
XM_036980385.1 mRNA downstream 10346 50106795 ~ 50197130 (+) False LOC110526093
XM_021606711.2 mRNA downstream 10347 50106796 ~ 50197130 (+) False LOC110526093
XM_036980383.1 mRNA downstream 10347 50106796 ~ 50197130 (+) False LOC110526093
XM_036980386.1 mRNA downstream 101893 50198342 ~ 50299370 (+) True si:dkey-220o5.5
TU585910 other upstream 344459 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 708996 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 789068 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 849755 49233579 ~ 49246453 (+) False LOC110526066
TU585255 other upstream 908885 49183873 ~ 49187323 (+) True edf1
TU586434 other downstream 623952 50720401 ~ 50735236 (+) True LOC118964907
TU586543 other downstream 815379 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 2182044 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 2555491 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3829493 53925942 ~ 53955130 (+) True G521552

Expression Profile