RNA id: TU586579


Basic Information

Item Value
RNA id TU586579
length 474
lncRNA type intronic
GC content 0.42
exon number 1
gene id G517108
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50781949 ~ 50782422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCAGGCTCGAACCcagatctgtagtgatgcctgtagcactgtgatgcagtgccttagacagctgcgccactcgtgAGGCCCGCCCCCtcaaaactttagacatctgtggcattgtgttgtgtgaccaaactgcacattttagagtggccttttattgtctccagcacaaggtgcacctgtgtaatgatcatgctgtttagtcagcttcttgatatgccacacctgtcatgtggatggattatcttgtaaAAGGAGAAATgcgtaaacaaatgtgtgcacaacatttgagagaaataagattttgtgcatatggacaatttctgttatcttttatttcagctcatgaaaccaacactttacatgttgcgtttatatttttgttcagagaaGAAAAGGCTTTTCTTCCAAAAATACCTTTGGTACCATTCAAATCAGACAGCAGAAACTCTTGAGAATCAGACTGGTTCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586573 lncRNA upstream 8343 50773346 ~ 50773606 (+) True G517102
TU586572 lncRNA upstream 8872 50772524 ~ 50773077 (+) True G517101
TU586531 lncRNA upstream 17832 50763716 ~ 50764117 (+) True G517069
TU586530 lncRNA upstream 18832 50762330 ~ 50763117 (+) True G517068
TU586439 lncRNA upstream 82264 50689902 ~ 50699685 (+) True G516990
TU586587 lncRNA downstream 22241 50804663 ~ 50807357 (+) True G517115
TU586635 lncRNA downstream 104853 50887275 ~ 50887712 (+) True G517159
TU586638 lncRNA downstream 116756 50899178 ~ 50900704 (+) True LOC110526127
TU586642 lncRNA downstream 121276 50903698 ~ 50903955 (+) True G517166
TU586542 lncRNA downstream 129406 50911828 ~ 50922097 (+) False LOC110526128
XM_036980396.1 mRNA upstream 20880 50747282 ~ 50761069 (+) True LOC110526112
XM_036980397.1 mRNA upstream 22070 50747281 ~ 50759879 (+) False LOC110526112
XM_021606743.2 mRNA upstream 22070 50747282 ~ 50759879 (+) False LOC110526112
XM_036980394.1 mRNA upstream 38829 50719287 ~ 50743120 (+) False LOC118964907
XM_036980393.1 mRNA upstream 47048 50719208 ~ 50734901 (+) False LOC118964907
XM_036980398.1 mRNA downstream 1789 50784211 ~ 50791053 (+) False tti2
XM_021606749.2 mRNA downstream 1790 50784212 ~ 50791053 (+) False tti2
XM_021606751.2 mRNA downstream 2389 50784811 ~ 50791053 (+) False tti2
XM_021606750.2 mRNA downstream 2566 50784988 ~ 50791053 (+) True tti2
XM_036980400.1 mRNA downstream 35306 50817728 ~ 50846599 (+) True LOC110526125
TU586434 other upstream 46713 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1030200 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1394737 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1474809 49305125 ~ 49307140 (+) True G516011
TU585185 other upstream 1535496 49233579 ~ 49246453 (+) False LOC110526066
TU586543 other downstream 129406 50911828 ~ 50922097 (+) True LOC110526128
TU589106 other downstream 1496071 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1869518 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 3143520 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3487503 54269925 ~ 54270259 (+) True G521914

Expression Profile