RNA id: TU586664


Basic Information

Item Value
RNA id TU586664
length 200
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G517186
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50958940 ~ 50959139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtatcctagaaggatattgatctcatcccgtcagtagaggatgcctggttatttaaaaaaatgccttcctaaccatcttaaataagcatgccccattcaagaaatgtagaaccaggaacagatatagcccttggttctccccagacctgactgcccttaaccaacacaaaaacatcctatggcgttctgcattagcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586659 lncRNA upstream 5075 50953431 ~ 50953865 (+) True G517181
TU586542 lncRNA upstream 36843 50911828 ~ 50922097 (+) False LOC110526128
TU586642 lncRNA upstream 54985 50903698 ~ 50903955 (+) True G517166
TU586638 lncRNA upstream 58236 50899178 ~ 50900704 (+) True LOC110526127
TU586635 lncRNA upstream 71228 50887275 ~ 50887712 (+) True G517159
TU586539 lncRNA downstream 21087 50980226 ~ 50984195 (+) False G517073
TU586540 lncRNA downstream 21087 50980226 ~ 50981687 (+) True G517073
TU587535 lncRNA downstream 122574 51081713 ~ 51082079 (+) True G517961
TU587552 lncRNA downstream 134804 51093943 ~ 51094182 (+) True G517978
TU587572 lncRNA downstream 150643 51109782 ~ 51110093 (+) True G517998
XR_005052159.1 mRNA upstream 36834 50911697 ~ 50922106 (+) False LOC110526128
XM_021606758.2 mRNA upstream 57846 50899096 ~ 50901094 (+) False LOC110526127
XM_036980400.1 mRNA upstream 112341 50817728 ~ 50846599 (+) True LOC110526125
XM_021606751.2 mRNA upstream 167887 50784811 ~ 50791053 (+) False tti2
XM_021606766.2 mRNA downstream 32434 50991573 ~ 51017128 (+) True LOC110526132
XM_021606773.2 mRNA downstream 154847 51113986 ~ 51128144 (+) False znf608
XM_021606774.2 mRNA downstream 154849 51113988 ~ 51128144 (+) False znf608
XM_036980405.1 mRNA downstream 155574 51114713 ~ 51128144 (+) False znf608
XM_036980404.1 mRNA downstream 157745 51116884 ~ 51128144 (+) True znf608
TU586543 other upstream 36843 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 223704 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1207191 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1571728 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1651800 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 1319354 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1692801 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 2966803 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3310786 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 3920560 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile