RNA id: TU586539


Basic Information

Item Value
RNA id TU586539
length 2665
lncRNA type antisense_over
GC content 0.41
exon number 6
gene id G517073
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50980226 ~ 50984195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCATTATCTTTATTCAAATTATAAGGTTGCTGAGATGTTCAGCAGAGCAAGTCATCTTTATGAATGCCACTTGGTCTAAGAAGCTAAATGACTTTTAGGAATCTAAATTTACAATCTagcaagaaaaaaaacatttcataCCATAGTCAGTTTGAGTAGCTACAGATAACATTAGCTGGTCTTACAACCAAAGATTGTGTCCATTACAGGAAAACCCCATACAAACAAGCCCATAGATTTAACTAACTTGGAGATACTTTCTTCGTTCTCAATTAAGTGAAAAAAAAGGACCTTAAAATGTCAATTTCCAGTTGCTTCTATAAAAACTAGAGAATTCAGAAAGATATTACATTCATGTTGTGTCAAGTGAGATGTCTCTTGCATGTGTGTAGAGCTTTGTTTTGGTCACATTTTAGAAACAACTAGTTCCTGCAAAGGTGCTTGGAAATGCTAGATATGCAGCAGTTAAGATTGTGAGGAACCACAGAGTGGTACAAAACATGGATTTAATCTTTGTtagctttttttttaaaccaactGGAAACTAACAGTGCTAAAAGAATGTATGCCGAAATGAAGAACGTGTCAGCAAGAACAGGTTAGTTGAATCTAGGGGCTGGTTTGTATGGGGCTTTCTTGTAATGGCCACAAAATACTTGGTTATCACGTCTTGCGTACAATCTGTAGCAACATTGGCCAAATAGTATTCTATTGAAGTGAAAAAAAAAGGCAAGTTTTACATGTCTTAAGATTTTATGGCACATTTGGTCCATGTTGGTACTTTCATATTTCAATCACTTTAAaacatgtattaaaaaaaaaaaaagttaaacatgTATTGCAAATGTTTATCAGCACAGCATTATGACAGCATTTTCTAAACTGCAGAGGGGGTTCTTGCTATTATTTTGTAGGTTTCCTATACCATTATCTTCTGTAGAATGCATTTATTAAACCCCTCTTGTACAGTATATTCAAATCTAGATGTGCAGTACTTGAACAAGGATGGCTTCAAACAGTTACAGGAAGTAGTCAGGGGTGCGTCTAGTCACATGAGGCTCTCCGCGTCGAGGAGCCGGGTCGAACTGTAGGAAAGAATATTTGAGTGTATCATCCAGCTCCATGATGGCTGCCTGGTTGCCACAGCGATAGCAGTAATTTGGTGCACTGAAAATGGTGACAACATTTTTGTCATGGCCCCAGTTGTATCCCTCCATAACCAATTGGTGGGCACGGGACACAAGGGTGAGTCCGTTGGCATGGTTGAAGGTTTCAGAGATGTCTTGACCAAAGGTGTAGCCAGCACCTCTAGGGGAGATACCCCAGCCACCACGGTCATCTGGGTCTGACCACAGAAGGTCACACATTGGACCCTCGTGTGGGACCTCTTGCAAGCGGTCCAGAGCCCGTATGTGATCAAGAGTGTCTATAGAAGGAGAGAGACCTCCATGTAGGCAGAAGATCTGTTCATCTACAAGTGCAGTTAGTGGGAGATAGTCAAACAGGTCTGTGAAGGATTTCCACACGTTGGCATTGCCGTATTTCCTCAAGCACTCGTCATAGAAGCCATACACCTGTGTGATTTGCCTGCTTTCGTGGTTTCCTCGCAGAATTGTGATTCGTTCTTGGTAACGGACCTTTAATGTGACGAGAAGTGTGACAGTTTCCACTGAGTAGTAGCCTCTATCCACGTAATCCCCCATGAACAGGTAGTTGGTGTCAGGAGATTTCCCCCCAATCTTGAAGAGTTCCATGAGGTCATGGAACTGCCCATGAACATCCCCACAAACTGTGACCGGACATCGCACTTTCTGCACATTTGATTCTTTGGTAAGGATTTCCTTGGCCTGAAAACACAAAACGACAACGTACATTTAGCTAGATCATTAACAGAACGCCCTGTCCTACCAGCGAAATCGTTGATCAGATAGCTAGCCTTGCACACCCATAAATATTGATTGGATTGAAGGGCATCCTGAATAAGTACGTTAACTGTGGTTAGTCATCATGGTGTTAATCATCTGGATTGTTTAGTCATTCCATATAGGCTTCAGTTTGGCTAGCTGAATGGTTAGGCCCAGTTCATGCTAACgagcgttagctagctaaatcgtTGGCAAGTATGCTTTGAAGCTAGCTGGCTACTGTTAGTTAGCTTTGCTAGCTACCTATTGTTAGCTACCGTTAAACTAGCCAACTAATCTCGTCGAACAATAATTTCAGCTCTAATCTAACAAATTGGGTTTAGGTAAAGTTACCTTCTCACAGAGACTCCTGACTTGATTCTCCGTAAGTTGTTTACACTCGTTTAGTTGTTCGATCCATTGATCTAATTCCTTCGTAAAAGATTTGTCTTCCATGACAGCAGTGGTATCAATCGACGTCTTGATCGGGAAAAAAATGTATTAGCTAAATTGactagctaactagttagctgGCTGACTTGTTAGCTGCTCCTGTCCCGACAAAGTGATGACTCTAAAATGTAGAACTAAAGACCTAACTATCTACTTTCTAATCATGGTAAAATATATAAAACCAAAGTCTCGTAAACAGGCGAACAGAGTATTAACTGAGGGGAATCAGAGTGGATTAAAATCCCTCGGTGCGGCAGAATTTTACCGGCGACGAAGCGCTGTAGCTAGCTGGCCTACAACAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU586664 lncRNA upstream 21087 50958940 ~ 50959139 (+) True G517186
TU586659 lncRNA upstream 26361 50953431 ~ 50953865 (+) True G517181
TU586542 lncRNA upstream 58129 50911828 ~ 50922097 (+) False LOC110526128
TU586642 lncRNA upstream 76271 50903698 ~ 50903955 (+) True G517166
TU586638 lncRNA upstream 79522 50899178 ~ 50900704 (+) True LOC110526127
TU587535 lncRNA downstream 97518 51081713 ~ 51082079 (+) True G517961
TU587552 lncRNA downstream 109748 51093943 ~ 51094182 (+) True G517978
TU587572 lncRNA downstream 125587 51109782 ~ 51110093 (+) True G517998
TU587589 lncRNA downstream 149464 51133659 ~ 51133895 (+) True G518012
TU587613 lncRNA downstream 163962 51148157 ~ 51148377 (+) True G518036
XR_005052159.1 mRNA upstream 58120 50911697 ~ 50922106 (+) False LOC110526128
XM_021606758.2 mRNA upstream 79132 50899096 ~ 50901094 (+) False LOC110526127
XM_036980400.1 mRNA upstream 133627 50817728 ~ 50846599 (+) True LOC110526125
XM_021606751.2 mRNA upstream 189173 50784811 ~ 50791053 (+) False tti2
XM_021606766.2 mRNA downstream 7378 50991573 ~ 51017128 (+) True LOC110526132
XM_021606773.2 mRNA downstream 129791 51113986 ~ 51128144 (+) False znf608
XM_021606774.2 mRNA downstream 129793 51113988 ~ 51128144 (+) False znf608
XM_036980405.1 mRNA downstream 130518 51114713 ~ 51128144 (+) False znf608
XM_036980404.1 mRNA downstream 132689 51116884 ~ 51128144 (+) True znf608
TU586543 other upstream 58129 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 244990 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1228477 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 1593014 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 1673086 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 1294298 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1667745 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 2941747 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 3285730 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 3895504 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile