RNA id: TU587964


Basic Information

Item Value
RNA id TU587964
length 2830
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G518365
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51563330 ~ 51566559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCAATTATACATATATTACAACTTAAGGGGGAAAACATCCATATTACACAACATCAACAAAAACATAACATTGTAcgatgtgtcttccgcatttaacccaaccactcTGACAGTGCATGAATACGTCACAATAAATAACAAACAAACCAACATGTAATCTGTATTTTCTCTTTAGAGTAATAAGCAAGCTCTATTAAACAAACTACATCTTGACAATGGACATTTGGCACATAGTAGAGTatgggtgctgagggtgctgcagcaccctgcAAAAaatcaggataaaaataaaaatattaataAGTATttccacaaaagtagtgcacttggcctttactagtcctgtattagcggaccgATATAGCCATCTATAGcacatgcaacaacaacaaGAAAATTGGTTTGAGTATCCACTAAAGAGAGGGTTACTTACATAAAACACATACTGCACTCCTAGAATTAATGGCGACTCGAGGAACCCCGGAGATCCTCAAGGATCACCTGGAGTTCCTCAAGGAATCATTGCTAGTCAATGGTTCATATTTGCACCtttggttagttaatagatcctTGGAGGAACCTTTAACGTTGCAATGTAACAACAGGTTCCTGGAGGAACCATGTAGTGGAGGCGTGGCTTAGTAAGGGCGTGGCTATACATTCCTGTTCATATCTATTGTCATCACATGTTAAAGTTGAACACTGACAGTTTTGTAGCTTCATTGAGGCGTACAGAGATTTAGGAGTTCCTCGAGAGCCTATGCAATTCCCAAAGTTGGTAAAGTTACAATTTATTACTATATGTAATCAGCTATGTTTATATTATTATGATGAAATTCTTATTAATATTATATTAGAATATGCAACATGCATAAATATTGAAGGAAATTTgaaatttgcagtgtacaaacttaacatgatgaacaggaatAACATTTAATCTCACCCATGAGATTAAATGTTattcctgttcatcatgttaagttatatatattttaccccctttttctccccaatttcaatcttgtctcattgctgccaCTCCCCAAAAAGCTCGGGAGGTGAAGGTCAAATCATGCGTCCTTCCTCCGCCAAACcgcacttcttaacacccgcccgcttaacccggaagccagcctcaccagtgtgtcggaggaaacaccgttcacctgatgatcgaggtcagcctgcaggtgcccggcccgccacaaggagtcgctgaagcgcaatgagccaagtaaagccccctaGCCAAActttcccctaacccggacgacgctgggccgctCTATGgaactcctgatcacggccgatTGGGATATAGCCCGTGATCGAACTTGGGCTGCAGTgacgccttagaccactgcgccactcgagaggccCTATCATATATTATTAAATTGATTCAGAATTGAACCCCTCCCATCACAAAAAGGTTCCGGTTTGAACCTTTACACAGGGGTTCCTCGAAGAGGGGTTCCTCAAACAACCTCTGAACTGGAAAGGTTCTGCTCAAAAAGGTTCTTCCAGGCAGGTTTACTTCTAACAGTGTGTACGAACAGGCACTTATTTCTGATTACATACAGGAACTAAAAAATTGTCAATATACACCTGTATTTTCTTAAAGATCATACTTTCAGTCATGGCAGTAGCTAAATATGAGGACCAAAAAATGAAAAAGTATACAaaacaataagaacacctgctctttccatgacatagaataaaaaggtgaaagctatgatccccttATTGATGTTGCTTGTTAAGTCCACTTCAATTaatgtagatgaagaggaggaggtaggttaaagaaggatttttaagccttgacacaatttaaacatggattgtgtgtatgccattcagagggtgaatgggcaagacaaaagattcaaatgcctttgaacggggtatggatagtaggtgccaggcgcaccagtttgagtgtgtcaataactgcaacgctgctgggtttttcaacagTTTTCCGGTGTGTATCCAAAATGGTCCACcccccaaaggatatccagccaacttgtcaCAACTgaaagtattggagtcaacaagggtcagcatccctgtcgaatgctttcgacaccatgtagagtccatgcccctaagaaattgaggctgttctgagggcaaaagaggaggtgcaactcaatattagaaaggtgttcctaatgtttggtattgtcacatcttctcctgctcctcccctctggCATTCGACGTCGCCGGAATACTAACCATcggtcctgggattcatcattacgcacacctggcactcactatgattcacacctggacttcGTTCATAATTTCTTCCCCTTTAAGTCACTCTCCTATGttcactcaccagttggtattATTCTTGTGTACCGGAGTGTAGCcatatggaaatgttttgttgttttattaaacgttTCAACTGCACCTGCTTCCCGACTCACAGCTCCATTATTACAGGCATACTCAGTGTATAAAGCTCTATTAAGGGTCAACATCTAAATATGGCTCCCAGCGTTGATCAAAGCTCAGAATGCTTATATCATTGATCTGACTGAATTCCAATCACGCCTGCCTCTTTGCGAATGAGTGGAATCATGAACAGTGGTTTGTCCATTATGTATGCCTGGATTTGCCTTTTTAGCAGCTCATTCGCCACTCTCTCAAACGGTTAACTCTGCCCTTTCGCGGCACAGGCCGAGAGCGACGTGAAATTAACTACCCCAGCTTGCAATCGGCTCAATAGGAAACTAGTCTAGAGACAATGTTGACAGTGTTTGCGAGATGTCGGACTAAAGGCAATTTAACTGTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU587766 lncRNA upstream 217803 51340605 ~ 51345527 (+) True G518181
TU587765 lncRNA upstream 225430 51337013 ~ 51337900 (+) False G518181
TU587772 lncRNA upstream 261792 51301268 ~ 51301538 (+) True G518186
TU587771 lncRNA upstream 262640 51300395 ~ 51300690 (+) True G518185
TU587768 lncRNA upstream 268930 51294188 ~ 51294400 (+) True G518182
TU587951 lncRNA downstream 40790 51607349 ~ 51625607 (+) True G518354
TU588039 lncRNA downstream 91774 51658333 ~ 51663288 (+) True G518435
TU588057 lncRNA downstream 121581 51688140 ~ 51688536 (+) True G518452
TU588401 lncRNA downstream 169201 51735760 ~ 51738373 (+) True G518773
TU588430 lncRNA downstream 278642 51845201 ~ 51845492 (+) True G518797
XM_021606776.2 mRNA upstream 338066 51159434 ~ 51225264 (+) False LOC110526137
XM_036980406.1 mRNA upstream 338066 51159436 ~ 51225264 (+) True LOC110526137
XM_021606774.2 mRNA upstream 435186 51113988 ~ 51128144 (+) False znf608
XR_005052160.1 mRNA downstream 146231 51712790 ~ 51718231 (+) False LOC118964909
XR_005052161.1 mRNA downstream 146231 51712790 ~ 51718231 (+) True LOC118964909
XM_021606787.2 mRNA downstream 316724 51883283 ~ 52006875 (+) False homer1b
XM_021606786.2 mRNA downstream 366213 51932772 ~ 52006875 (+) True homer1b
XM_021568351.2 mRNA downstream 711135 52277694 ~ 52279409 (+) False LOC110493840
TU586543 other upstream 641233 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 828094 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 1811581 49749188 ~ 49751749 (+) True barhl1a
TU585370 other upstream 2176118 49386514 ~ 49387212 (+) False LOC118964898
TU585313 other upstream 2256190 49305125 ~ 49307140 (+) True G516011
TU589106 other downstream 711934 52278493 ~ 52278998 (+) True LOC110493840
TU589275 other downstream 1085381 52651940 ~ 52655297 (+) True G519603
TU591331 other downstream 2359383 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 2703366 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 3313140 54879699 ~ 54940873 (+) False LOC110526161

Expression Profile