RNA id: TU589359


Basic Information

Item Value
RNA id TU589359
length 4072
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G519685
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52670425 ~ 52674545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGTTTATATTAAAAGATAGCAAAGGGGTAATTCACTACATCACACAACACAGCTTGTTAGTACTGCAGGAAATTCATTTAGTATTTTTCATATTTACACATTAAGTGACAACCAAACAAAGAAATCATAAATATCTCTTTTAGTTAACTTTACAACAGTTATATGTGACCATTATTAAATAACTGGCAGCAACCCTATCATTTACAATGTTTGGAAACACAGTGGTTAAATAATCCAGCAAAACAAAAATGTTCTTCTCCAGTGAGTAATATTAATACAAGTAAAAACAATAATGAAATCCCTTTGTACAAAATACTCTCTATACAACAAAATCAACACAATATATTTGACAATTTGTCTGCTTAAAATGCATGGTAAAATCTGTACAGCTTAGAAACCTTTGCTGAGTGGGTGGGATTCTGTGTGTTAGCGTAGTTAATGATTGAAGCATTGGTCAGATTGATGCGTCTGTGATCCAACCATCAGAGACCGCAGGTAAAATAGCTGCCAAGACCTTCTCTCATTGGCATCAGTGCTGTGGAATTCCTGTCTAGCAGCAAATCAGCATGTTGCTGAACTTGAAGTTACTTCAAGATACATGGTTTTGAGAACTCAAACTGATATCTGTCCAGAGCAATGCTCTATTTCCCACCCTATGCATTTCCATGACAGATTGTACAGTACAAAACCATGTTAAATGTAAGGGCTAAATTCAATCTGTAATGCTGAAGATCCGCACTACAGcgcgattgaaatgtaaaggcaatgttcccaagttcgcagagactgcattcacggtaaacgctgcatatgtaatatatattgtttttatttgaaTAATATGGATGGTTCCGTAAATTACCAGTGGTATATTCTTTGTCTAAAGTAACACCTCTGTGATATATGGTTAATGGTAATCTCATATACTGTAcggtgcattcgaaaagtattcagaccccttgaatttttccacatttttatgttacagccttattctaaaatagattcaatatttttttccccctcaatctacacacaatacccaacaaCGACAACActaaaacagtataaaaaaaactgaaatatcacatttacataagtattcagaccctttaatcagtacattgttgaagcgcTTTTGgcagtcttcttgtgtatgacgctacaagcttggcacacctgcatttgggtagtttctcctattcttctctgcagatcctctcaagctctgtcaggttggatggggagcgttgctgcacagctattttcaggtctctccagagatgttcgattaggttcaagtccgggctctggcttggccactcaaggacattgagacttgttccaaagccactcctgcgttgtcttggctttgtgcttagggtcgttgtcctgttgtaaggtgaacctttccctcgatccagtctagtatcccagtccctgccactgaaaaacatccccacagcatgatgctgccaccaccttgcttcaccgtaaggatggtgccaggtttcctccagaccggagaatcttgtttctcatggtctgagagtctttacgtgccttttggcaaaatccaagagggctgtcatgtgccttttactgatgagtggcttccctctggccacttccataaaggcctgattggttgagtgctacagagatggttgtccttctggaaggttctcccatctccacagagaaacaatggagctctgtcagagtgaccattgtgttcttgttcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggcggccagctctgggaagagtcttggtggttccaaacttcttccatttaagaacgatggaggccactgtgttctttagaACCTtcttcagatctgtgcctcgacacaatcctgtgtctGAGCAATATGGACAATTCCTCCgacctcatggcatggtttttgctctgacatggactgtcaactgtgggacattataaagacaggtgtgtgcctttccaaatcatgtccaatcatttgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaattttttgtcttattgcaaagggtctgaatacttatgtaaataaggcatctgttttacattttgtataaaatgtgcaaacatttctaaaaaacagttttctctttgtcattatggggtattgtgtggaggttgatgagggaaaaaacatatttaatcaatttcagaataaggccgTAAAGTAACAATGTGGAGAAGTCaataagtctgaatactttcccgaatgcactgtatgtgcattGTATATTTCACAGAGGGCAACCTTGTCAAATTACATAATACACTGAAGCTTATTCTATAGCTTAGACTAGAACAGTGGGCACTAAGTGTACAGTGCTTTACAGGTTCAGAGATGACAGATATTTGCCTTAATCAGAACAGCTAAAAGAATGTAAAGCACATTTTACGAACTCCAAGAAATATCAAACTGAggaaagaaaaaaatgaaaaaaatgtttGGCACTTATACTTCATCGAGAATGCTATTTCACGAGGACCAGAAATGGTTTACTTGCAGTTTACTTTAGATTTTTAAAATGAATGGATTTCAACAGTTTCCAGTACCAGTCTAGAGTACCCATTTCCAGTACCAATCTAGAGTACCAGTTTCCAGGACCTGTCTAGAGTACCAGTTAAGAGAGATCAGATAGATAAGTCCATGGTTGGTTTTAGAAGAGGAGGTATACAATGTGAAACATGTTTGAAACAGATCGTCCCATTGCTGAGCTCTCCCATAGGTaactgtctttctctcctttacGTGGCACATAGCCTACAAAATGTTATTCTAGTATAAATGTAGACGTAGCGAAGCTCCACCCTTTGGCACATAAATATAGAGGTTTGAATGACTGGGTCATACTGCAATACAGATCTACACAACACTCTCACCATTCTTTAAAATCAGCAAAAACCAACTCAAAGAACAAAAAGTTCATAAATAGAGTTCATAAGGACATGGTATATGATGAGTGGCATTATAGAGAGAGCGAGCAGTTTGTTACATAGTCTCCTGCGGGAGTATATCGTTTTTAGCTTTGTCAAAAACTTCACAAAAAATGCAATGTAATATACTAAGCGGCCCTCACCTTGAGGGGTTGCATTCTTTAAAAAGGCTCCAGATTTCTCTGTTTGTCATTTCTTTTCTCAAAgtgtatttttttgctttctttttCCAGCATGCTTGTAAATTGTAATTCAGTCTGTTGCCTGAAGTGGGTAGCGGTGAGTCAGTTTGTGGTTGTGAGAGGGTGGTGGTAAGAgtgcggatgtgtgtgtgtaggatgaaGTCCAGCGGGCCGAGGAGATGCCAGATTTGTATGCATGCATaaatgtgtgtgtagcatgaagtATGTATGTGACTGTAGTGTTTGTATGTACCACTTATCTGTGTGAGTGTCAGCTTGTGTATGACTCACTGTGGCCTGAAGCATAAGTACGTATCgtttactgtatgtatgtatactgtatacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaaagggTGTGTAGTTGAAGGGATCAGGAGGACTAAGGGTAAAGAGTAGGAGTAGGGAGGCAGTGAAGCAAGAGGCCTCCCTTACACCTCGCTCTCGGTAGAGGGTTTGCGTGCGGGGGTCCAGCCGGTGTCAGGCAGGCTGTGTTGGGGGTGGCGTTGGGGTGTGACGGTGACGGGGGTCAGCGTGTTTATGGACGAACACTCCGACGTCTCCTCTTGGAGCAACTGCTCTGTCTCGCCGTCGTCCAGCGAGGCGCTGCTGGCCTGCAGGGACACAGTGTCCGTGCGCATGCATGTGTGCAGACCACCACGTGACGGCTTCAGCTGCTTCAGGTCCTCCCAGTACAGCTCCTCGCTGGAGAGGAGACACACTCCTTCCACGATGCGGATCTTCTCCTTGGTGTAGCCACTGTCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU589347 lncRNA upstream 13966 52656204 ~ 52656459 (+) True G519675
TU589274 lncRNA upstream 20733 52648357 ~ 52649692 (+) True G519602
TU589236 lncRNA upstream 204235 52464049 ~ 52466190 (+) True G519564
TU589058 lncRNA upstream 453117 52216987 ~ 52217308 (+) True G519388
TU589049 lncRNA upstream 461435 52207796 ~ 52208990 (+) True G519379
TU589976 lncRNA downstream 230891 52905436 ~ 52905657 (+) True G520259
TU589977 lncRNA downstream 231177 52905722 ~ 52905931 (+) True G520260
TU590234 lncRNA downstream 413714 53088259 ~ 53088587 (+) True G520505
TU590236 lncRNA downstream 414821 53089366 ~ 53089634 (+) True G520507
TU590237 lncRNA downstream 416237 53090782 ~ 53091037 (+) True G520508
XM_021606791.2 mRNA upstream 24780 52524356 ~ 52645645 (+) False mapk8ip1b
XM_021606793.2 mRNA upstream 24780 52524358 ~ 52645645 (+) True mapk8ip1b
XM_036980424.1 mRNA upstream 111513 52555005 ~ 52558912 (+) False LOC110502468
XM_036980420.1 mRNA upstream 111513 52555023 ~ 52558912 (+) False LOC110502468
XM_036980422.1 mRNA upstream 111513 52555023 ~ 52558912 (+) False LOC110502468
XR_005052417.1 mRNA downstream 391482 53066027 ~ 53067743 (+) True LOC118965081
XM_036980427.1 mRNA downstream 436595 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA downstream 436711 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA downstream 436739 53111284 ~ 53202399 (+) True LOC110526152
XR_005052453.1 mRNA downstream 484366 53158911 ~ 53159015 (+) True LOC118965122
TU589275 other upstream 15128 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 391427 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 1748328 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 1935189 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 2918676 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 1251397 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1595380 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 2205154 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 2245927 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 2809704 55484249 ~ 55484607 (+) True G523529

Expression Profile