RNA id: TU589976


Basic Information

Item Value
RNA id TU589976
length 222
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G520259
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52905436 ~ 52905657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGCTTCAAAAGCACAATCCGATGATTGGACCACAAGCTCCATCCTGGATTGGAGCCCATTTTGCCATTCCCACTGCCTTCAAGCAGCACAGCCTTCCTCAAGTCATCTTCCTCAGGATGTTAGCAAGACTGTGGAGGTCTCTGCTATCCCCACAGAATACCATTACCCCCTGGAAGTGTTCAGTAAGGCCCGTGCTACTTCCCTTCCCCCGCACCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU589358 lncRNA upstream 230891 52670425 ~ 52674545 (+) False G519685
TU589359 lncRNA upstream 230891 52670425 ~ 52674545 (+) True G519685
TU589347 lncRNA upstream 248977 52656204 ~ 52656459 (+) True G519675
TU589274 lncRNA upstream 255744 52648357 ~ 52649692 (+) True G519602
TU589236 lncRNA upstream 439246 52464049 ~ 52466190 (+) True G519564
TU589977 lncRNA downstream 65 52905722 ~ 52905931 (+) True G520260
TU590234 lncRNA downstream 182602 53088259 ~ 53088587 (+) True G520505
TU590236 lncRNA downstream 183709 53089366 ~ 53089634 (+) True G520507
TU590237 lncRNA downstream 185125 53090782 ~ 53091037 (+) True G520508
TU590238 lncRNA downstream 186058 53091715 ~ 53092164 (+) True G520509
XM_021606791.2 mRNA upstream 259791 52524356 ~ 52645645 (+) False mapk8ip1b
XM_021606793.2 mRNA upstream 259791 52524358 ~ 52645645 (+) True mapk8ip1b
XM_036980424.1 mRNA upstream 346524 52555005 ~ 52558912 (+) False LOC110502468
XM_036980420.1 mRNA upstream 346524 52555023 ~ 52558912 (+) False LOC110502468
XM_036980422.1 mRNA upstream 346524 52555023 ~ 52558912 (+) False LOC110502468
XR_005052417.1 mRNA downstream 160370 53066027 ~ 53067743 (+) True LOC118965081
XM_036980427.1 mRNA downstream 205483 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA downstream 205599 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA downstream 205627 53111284 ~ 53202399 (+) True LOC110526152
XR_005052453.1 mRNA downstream 253254 53158911 ~ 53159015 (+) True LOC118965122
TU589275 other upstream 250139 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 626438 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 1983339 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2170200 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3153687 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 1020285 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1364268 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1974042 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 2014815 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 2578592 55484249 ~ 55484607 (+) True G523529

Expression Profile