RNA id: TU590236


Basic Information

Item Value
RNA id TU590236
length 269
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G520507
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53089366 ~ 53089634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagtgctaacagatccatatcttatttggaagTGAAGAGGCGATGACTTAAAATTAGACCcgcattcagaatttcacttcctgtttggaagattgcctgccctatgagttctgttatactcacagacataattcaaacagttttagaaacttcagagtgttttctatccaatagtaataataatatgcatatattagcaatctaggacagagtcggatgcagttcactatgggcacgcaattcatccaaagtgaaaatactgccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590234 lncRNA upstream 779 53088259 ~ 53088587 (+) True G520505
TU589977 lncRNA upstream 183435 52905722 ~ 52905931 (+) True G520260
TU589976 lncRNA upstream 183709 52905436 ~ 52905657 (+) True G520259
TU589358 lncRNA upstream 414821 52670425 ~ 52674545 (+) False G519685
TU589359 lncRNA upstream 414821 52670425 ~ 52674545 (+) True G519685
TU590237 lncRNA downstream 1148 53090782 ~ 53091037 (+) True G520508
TU590238 lncRNA downstream 2081 53091715 ~ 53092164 (+) True G520509
TU590262 lncRNA downstream 19505 53109139 ~ 53109367 (+) True G520531
TU590291 lncRNA downstream 56081 53145715 ~ 53154614 (+) True G520560
TU590492 lncRNA downstream 191384 53281018 ~ 53281230 (+) True G520753
XR_005052417.1 mRNA upstream 21623 53066027 ~ 53067743 (+) True LOC118965081
XM_036980422.1 mRNA upstream 530454 52555023 ~ 52558912 (+) False LOC110502468
XM_036980427.1 mRNA downstream 21506 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA downstream 21622 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA downstream 21650 53111284 ~ 53202399 (+) True LOC110526152
XR_005052453.1 mRNA downstream 69277 53158911 ~ 53159015 (+) True LOC118965122
XR_005052452.1 mRNA downstream 73461 53163095 ~ 53163203 (+) True LOC118965121
TU589275 other upstream 434069 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 810368 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2167269 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2354130 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3337617 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 836308 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 1180291 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1790065 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1830838 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 2394615 55484249 ~ 55484607 (+) True G523529

Expression Profile