RNA id: TU590701


Basic Information

Item Value
RNA id TU590701
length 209
lncRNA type intronic
GC content 0.42
exon number 1
gene id G520959
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53557876 ~ 53558084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTATCGAGATAGACAAGGCATCAAGGTATCTTTTCGCTTAGATTACAGTATTCGTCGATAAGAGAGGCTCATCTTTTCTGCAATGTCCTCCCCACTGCAGCCTGGAAATTACATTTCATACGTATCCCCCCATTCCTATCCCTCAGACAGAATTTTATTCCCCAGAAAAACAACAAGTCCAAAACAAAAGCCAGAGTTACTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590700 lncRNA upstream 280 53557389 ~ 53557596 (+) True G520958
TU590499 lncRNA upstream 270886 53286419 ~ 53286990 (+) True G520760
TU590492 lncRNA upstream 276646 53281018 ~ 53281230 (+) True G520753
TU590291 lncRNA upstream 403262 53145715 ~ 53154614 (+) True G520560
TU590262 lncRNA upstream 448509 53109139 ~ 53109367 (+) True G520531
TU590718 lncRNA downstream 16268 53574352 ~ 53574555 (+) True G520976
TU590730 lncRNA downstream 28393 53586477 ~ 53586682 (+) True G520988
TU590732 lncRNA downstream 30773 53588857 ~ 53589198 (+) True G520990
TU590733 lncRNA downstream 31817 53589901 ~ 53590103 (+) True G520991
TU590734 lncRNA downstream 35287 53593371 ~ 53593738 (+) True G520992
XM_036980427.1 mRNA upstream 355477 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA upstream 355477 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA upstream 355477 53111284 ~ 53202399 (+) True LOC110526152
XR_005052452.1 mRNA upstream 394673 53163095 ~ 53163203 (+) True LOC118965121
XR_005052453.1 mRNA upstream 398861 53158911 ~ 53159015 (+) True LOC118965122
XM_036980433.1 mRNA downstream 462028 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA downstream 462031 54020115 ~ 54035663 (+) False LOC110526155
XM_036980434.1 mRNA downstream 524661 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 524680 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA downstream 524680 54082764 ~ 54104736 (+) False LOC110526157
TU589275 other upstream 902579 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1278878 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2635779 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2822640 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3806127 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 367858 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 711841 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1321615 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1362388 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1926165 55484249 ~ 55484607 (+) True G523529

Expression Profile