RNA id: TCONS_00032750


Basic Information

Item Value
RNA id TCONS_00032750
length 1084
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_016685
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38282647 ~ 38284749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACATCGTCACAATGCAGTCCTTTTTGATACTTGTAGTCTTGCTTTGTCTGGCTTTTTCCATAGTGGCACGAGCAGCAATCACTCTGAACTGCGGCGAAAACTCTGTTTCTGTGCAATGGAGTGAAGTAGTCTCTCAAATAGATCCATTTCTTCTCCGGTTGGGGAGCTGCCCTCCATCTCGAGCATCTGTGAACGCTCAAGGGTCCGAAGCAGTGTTTCATGCTGAATTTGGGGCCTGTGACATTAGGAGGCTGGTGACAATGGGTGGGATTGTATTTGAGACTGAGATCACTTCTGTGGCTGAAACTGTGTCTTATCCAGTGGCATGTGTTTTTGAAAGGCCAAAAGAGTGGTCTCCTCCTTTGTATGATCCTCTGGCGTTTCAAACATATGGCCAGGGGGGTTTGGCCTTTCACTTGACTCTTATGAATGATGACTTCAGTGGTTTGGCCACTTCCACAACATTTTCTCTAGGCTCAACAATTCCAATTTCCGCCTCTGTTGAACAATTGGGCCATCAGCCTTTAATACTGTTCTTGGATGAATGTTGGGCCACTACAACACCAATATTGAGTCCAGAGTCTCTCATTCACCCACTAATTACAAATAGCGGATGTCTGGTAGACAGCAAAAAGACAAACTCTAGATTTCTGCCAAGAAACCAGCTTTCAGAGATCCGATTAGGTCTTCAAGCTTTCAGATTTGCCACAGGGCAAGATATCTACCTGCACTGCAGACTTGTGGCATGGGACCCTCAAGCTCTGGACAGTAGCAAGAAGGCATGTCAATATGACAGTGCCAGCTCACAATGGGTGTTGTTGGATGATCCTTCCCAGAGTTCTCTCTGCAGCTGTTGTGACACTAGTTGTCAAGGAACAAAGAAAAGGGAAATAACAGCAGGTTCCTCTGCAATATCTATGCTTGGGCCTCTGGTTATTACAAAGTGATTACAGTGTCAAATACCTTTTTAGGCATGTCCAGATTGTTCTCCATGCAACTGGAGCTGCTTTGGACACCCTAAGGGTTGAGTTCTTTCTGTTCCTGttaaactgtttattaaaattaataaactgtTCAAATGA

Function

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0032190 acrosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-590 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix.

Ensembl:

ensembl_id ENSDART00000132621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032745 lncRNA downstream 57274 38216345 ~ 38225373 (-) True XLOC_016682
TCONS_00033892 lncRNA downstream 88168 38192959 ~ 38194479 (-) True XLOC_016681
TCONS_00033891 lncRNA downstream 136946 38144162 ~ 38145701 (-) True XLOC_016680
TCONS_00032737 lncRNA downstream 140670 38138350 ~ 38141977 (-) True XLOC_016679
TCONS_00033384 lncRNA downstream 467274 37813663 ~ 37815373 (-) True XLOC_016662
TCONS_00032760 lncRNA upstream 713299 38998048 ~ 38998761 (-) False XLOC_016690
TCONS_00032761 lncRNA upstream 728171 39012920 ~ 39015104 (-) True XLOC_016690
TCONS_00032767 lncRNA upstream 797547 39082296 ~ 39086574 (-) False XLOC_016693
TCONS_00033386 lncRNA upstream 1325572 39610321 ~ 39612464 (-) True XLOC_016697
TCONS_00032775 lncRNA upstream 1449820 39734569 ~ 39737898 (-) False XLOC_016698
TCONS_00032748 mRNA downstream 568 38277275 ~ 38282079 (-) True XLOC_016684
TCONS_00032746 mRNA downstream 21375 38231695 ~ 38261272 (-) False XLOC_016683
TCONS_00032747 mRNA downstream 26058 38254095 ~ 38256589 (-) True XLOC_016683
TCONS_00032744 mRNA downstream 57259 38204733 ~ 38225388 (-) False XLOC_016682
TCONS_00032742 mRNA downstream 76506 38201838 ~ 38206141 (-) False XLOC_016682
TCONS_00032751 mRNA upstream 665 38285414 ~ 38288024 (-) False XLOC_016686
TCONS_00032752 mRNA upstream 1263 38286012 ~ 38287987 (-) False XLOC_016686
TCONS_00032753 mRNA upstream 2609 38287358 ~ 38312757 (-) True XLOC_016686
TCONS_00032755 mRNA upstream 33251 38318000 ~ 38337122 (-) False XLOC_016687
TCONS_00032754 mRNA upstream 33251 38318000 ~ 38337122 (-) True XLOC_016687
TCONS_00032743 other downstream 77854 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032691 other downstream 873490 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032658 other downstream 1608728 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 1611489 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 1950316 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032764 other upstream 778005 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 1086062 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 1450803 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032777 other upstream 1642212 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other upstream 1723989 40008738 ~ 40026622 (-) True XLOC_016700

Expression Profile

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