RNA id: TU590796


Basic Information

Item Value
RNA id TU590796
length 262
lncRNA type intronic
GC content 0.36
exon number 1
gene id G521054
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53681052 ~ 53681313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTTGTATATGTTAGTGTACTACCCTCCTAAACCTAATATTTCTTAGAGATCTAAACATTCCTGTGTGTTGCCCAAACAATGCACTAGTTGAAAATGTTGTTATCATGTTAGAATCCTTTAACTTTGTGCTACATGCCACAGGGCTTACACACAACAAAGGCCATACTTTTGATCTTGTGCTGTCCCATGGTCTGAATATTGAAACTTGGAAAAACTATTAATGTGTGTGTCTCTAACCATCTCAGTATTGTTTTTAGAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590793 lncRNA upstream 2574 53678197 ~ 53678478 (+) True G521051
TU590789 lncRNA upstream 4640 53676177 ~ 53676412 (+) True G521047
TU590786 lncRNA upstream 8334 53672515 ~ 53672718 (+) True G521044
TU590781 lncRNA upstream 13968 53666840 ~ 53667084 (+) True G521039
TU590777 lncRNA upstream 19348 53661472 ~ 53661704 (+) True G521035
TU590802 lncRNA downstream 9671 53690984 ~ 53691232 (+) True G521060
TU590816 lncRNA downstream 27471 53708784 ~ 53709001 (+) True G521074
TU590817 lncRNA downstream 28011 53709324 ~ 53709554 (+) True G521075
TU590846 lncRNA downstream 71180 53752493 ~ 53752735 (+) True G521104
TU590547 lncRNA downstream 88005 53769318 ~ 53769575 (+) True G520808
XM_036980427.1 mRNA upstream 478653 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA upstream 478653 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA upstream 478653 53111284 ~ 53202399 (+) True LOC110526152
XR_005052452.1 mRNA upstream 517849 53163095 ~ 53163203 (+) True LOC118965121
XR_005052453.1 mRNA upstream 522037 53158911 ~ 53159015 (+) True LOC118965122
XM_036980433.1 mRNA downstream 338799 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA downstream 338802 54020115 ~ 54035663 (+) False LOC110526155
XM_036980434.1 mRNA downstream 401432 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 401451 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA downstream 401451 54082764 ~ 54104736 (+) False LOC110526157
TU589275 other upstream 1025755 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1402054 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2758955 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 2945816 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 3929303 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 244629 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 588612 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1198386 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1239159 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1802936 55484249 ~ 55484607 (+) True G523529

Expression Profile