RNA id: TU590846


Basic Information

Item Value
RNA id TU590846
length 243
lncRNA type intronic
GC content 0.38
exon number 1
gene id G521104
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53752493 ~ 53752735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCCAATCACCTTTTTCATCAGAATAGTCCATGCTAATGCTAACGATGGACTCTTCAGGAAACTTGTCAGGCTTTAGTATTAAGTATAGGCGTACCATTAGCCAATCAAAGTATATATTTGTAGCTCCCATTGTTTACAATCTTGCATTGTTATCAATCTCATTGGGAAAAAGGTGAACATGCTTGCAGCTTAGCAGTCAATCCCTATAGCCATGAGCATGAAAACCTTACATTGGAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590817 lncRNA upstream 42939 53709324 ~ 53709554 (+) True G521075
TU590816 lncRNA upstream 43492 53708784 ~ 53709001 (+) True G521074
TU590802 lncRNA upstream 61261 53690984 ~ 53691232 (+) True G521060
TU590796 lncRNA upstream 71180 53681052 ~ 53681313 (+) True G521054
TU590793 lncRNA upstream 74015 53678197 ~ 53678478 (+) True G521051
TU590547 lncRNA downstream 16583 53769318 ~ 53769575 (+) True G520808
TU590549 lncRNA downstream 21351 53774086 ~ 53775524 (+) True G520810
TU591387 lncRNA downstream 254888 54007623 ~ 54009061 (+) True G521608
TU591388 lncRNA downstream 256480 54009215 ~ 54010345 (+) True G521609
TU591532 lncRNA downstream 282175 54034910 ~ 54035608 (+) True LOC110526155
XM_036980427.1 mRNA upstream 550094 53111140 ~ 53202399 (+) False LOC110526152
XM_036980429.1 mRNA upstream 550094 53111256 ~ 53202399 (+) False LOC110526152
XM_036980428.1 mRNA upstream 550094 53111284 ~ 53202399 (+) True LOC110526152
XR_005052452.1 mRNA upstream 589290 53163095 ~ 53163203 (+) True LOC118965121
XR_005052453.1 mRNA upstream 593478 53158911 ~ 53159015 (+) True LOC118965122
XM_036980433.1 mRNA downstream 267377 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA downstream 267380 54020115 ~ 54035663 (+) False LOC110526155
XM_036980434.1 mRNA downstream 330010 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 330029 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA downstream 330029 54082764 ~ 54104736 (+) False LOC110526157
TU589275 other upstream 1097196 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1473495 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2830396 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 3017257 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 4000744 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 173207 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 517190 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1126964 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1167737 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1731514 55484249 ~ 55484607 (+) True G523529

Expression Profile