RNA id: TU590549


Basic Information

Item Value
RNA id TU590549
length 1439
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G520810
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53774086 ~ 53775524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggacggaggctatactgttacactggcaatactaaagtgcctgtaagaacatccaatagtcaaaggttaatgaaatacaaatggtatagagggaaatagtcctataataactacaacctaaaacttcttacctgggaatattgaagactcatgttaaaaggaaccaccagctttcataggttctcatgttctgagcaaggaactgaaacgttagctttcttacatagcacatatttcacttttaagttcttctccaacactttgtttttgtattatttaaaccaaattgaacatgtttcattatctacttgaggctaaattgattttattgatgtgttaattcagtattgttgtaattgtcattattacaaatacattatttttttattggccgattaatcggtattggcttttttggtcctccaataatcggtatcggcgttgaaaaatcataatcggtcgacctttagTTAAGATGTCTACAGCCCCCATTCCCCACTtctgtgggagagagggggtcTGGCTATCTTCAAACGTTTGCCTAGCTGATGGGTCCTTTGATCCACTgtcaggagagtcatgacactgGTGAAGAATTTGTTCCAGCGTATAATCACTGCCACCTGGTTAGGTTAGCATTGTCTGGTTAGGTTAGCGACGTGTCATCTGATGGGACCAGCTACAATTTAGCGTTATTGCCACGTGCAAGTCAATCTACAATTTGAATTGGCTGATGTGCATTTTAAGCCAGATAAACTGCTTCAATTTAAATGGTTGCTTATGTTCAAGTATGTCCCCCAAGATTGTCATATTGATTGGTTTGTTATTGAATGAGTACTGTTAAAACTATTTCCAAGTCTGTGTGTAAATGTGGTTACATACTGAAGATATGATAAGATTACCATTTTTTTATCATCATTAAAATCGTCATTAGCCATGTTTGCATGACTGCTATTACTTATTTTGTTTGGGTCTGTTCTGTTTGGATGTAAATATTGTGTAAGGTGAGGATTCTGCAAAAATAAGTAAGACTGAATAATGATTCTCCTTACCACACCTTAAGACCTGAGCATTTTTAGTCAACGGTGTGAGAAAGCTATACATTTAGATTGTTTTTCAACTTTCTTTCTTTTTGTATTATTGCCTTAACCCTTTTAAATAGTTGTCATGGTGTATACATGTCACATCACCTCAACAGGAGAAAAACTCGGGGGAGAAGTTGCACGAATGCACAGATCTACGATCAGCTTACTTACCAAAAGCTGGATCTTAATCATTAGAAGTGGAAAACACAAAACTGAACATAGATCAGCATCAAGGTGCAACTTCATCCAACTCCAGGAGGCTCTGCAGTGATCAAAAAGTCACAACGCTAAACCAACATGCAAACAGAACAATCATGTCCGCACAATGTTTCTATGGACTGAATTACTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU590547 lncRNA upstream 4511 53769318 ~ 53769575 (+) True G520808
TU590846 lncRNA upstream 21351 53752493 ~ 53752735 (+) True G521104
TU590817 lncRNA upstream 64532 53709324 ~ 53709554 (+) True G521075
TU590816 lncRNA upstream 65085 53708784 ~ 53709001 (+) True G521074
TU590802 lncRNA upstream 82854 53690984 ~ 53691232 (+) True G521060
TU591387 lncRNA downstream 232099 54007623 ~ 54009061 (+) True G521608
TU591388 lncRNA downstream 233691 54009215 ~ 54010345 (+) True G521609
TU591532 lncRNA downstream 259386 54034910 ~ 54035608 (+) True LOC110526155
TU591544 lncRNA downstream 267001 54042525 ~ 54042737 (+) True G521764
TU591568 lncRNA downstream 275747 54051271 ~ 54051519 (+) True G521788
XM_021606800.2 mRNA upstream 14490 53354778 ~ 53759596 (+) True LOC110526153
XM_036980429.1 mRNA upstream 571687 53111256 ~ 53202399 (+) False LOC110526152
XM_036980433.1 mRNA downstream 244588 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA downstream 244591 54020115 ~ 54035663 (+) False LOC110526155
XM_036980434.1 mRNA downstream 307221 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 307240 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA downstream 307240 54082764 ~ 54104736 (+) False LOC110526157
TU589275 other upstream 1118789 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1495088 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 2851989 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 3038850 50720401 ~ 50735236 (+) True LOC118964907
TU585910 other upstream 4022337 49749188 ~ 49751749 (+) True barhl1a
TU591331 other downstream 150418 53925942 ~ 53955130 (+) True G521552
TU591700 other downstream 494401 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 1104175 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 1144948 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1708725 55484249 ~ 55484607 (+) True G523529

Expression Profile