RNA id: TCONS_00032754


Basic Information

Item Value
RNA id TCONS_00032754
length 1533
RNA type mRNA
GC content 0.51
exon number 11
gene id XLOC_016687
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38318000 ~ 38337122 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGAGTCGCTGCTGTCTGTGAGAAAATGAGCAGCGGTGGCACCCGACGCAGGACTGCATCAGTGCCGGACTCGGATCCCGACGGAGAACCAGCGGTTACCCTAAAGAAAGAGATCGGACTTCTCAGTGCATGTGGGATTGTCGTGGGTAACATCATTGGGTCTGGGATTTTTGTCAGTCCGAAGGGTGTTTTGGAAAACTCTGGTTCAGTGGGTCTGGCTCTCATAGTGTGGATCCTCACAGGCATCATCACTGCCATCGGTGCTCTGTGCTATGCTGAACTAGGAGTCACAATCCCAAAGTCAGGTGGAGATTATTCCTACGTTAATGACATCTTTGGAGGGCTTGCTGGGTTTCTGAGACTGTGGATTGCAGTGTTGGTCATCTATCCAACTAACCAGGCTGTGATTGCCCTCACATTTGCCAATTACGCATTGCAGCCCCTCTTCCCGTCCTGCTTTCCTCCGGAGAGAGCTCTGGGTTTACTGGCCGCTGTCTGTCTGTtgctgTTAACTTGGATTAACTGCTCCAGTGTCCGCTGGGCGACGCGTGTTCAGGATGTTTTCACCACAGGCAAGCTCCTCGCCCTCGGTCTCATCATCATTATGGGCATCGTGCAAATCTGCAAAGGTCATTTTTATTGGTTGGAACCGGAGCATGCATTTCACCCTCTCCAGCCATATGACATGGGCCGCATTGCACTCGCTGTTCTGCAGGGATCCTTTGCTTATGCAGGCTGGAACTTCCTTAATTATGTAACAGAGGAGCTGATCGACCCCTACAGGAACCTTCCTCGTGCGATCTTCATCTCAATCCCTCTGGTCACGTTCGTCTATGTATCAGCAAATATTGCATACGTTACAGCAATGAGCCCCCAGGAGTTACTGGCCTCCAATGCTGTAGCTGTGACATTTGGTGAAAAGCTGCTAGGCGTGATGTCATGGCTCATGCCCATCTCTGTTGCTCTGTCCACCTTCGGAGGGGTGAATGGATCCCTTTTCACATCATCTAGGTTATTCTTTGCAGGTGCGAGGGAGGGTCATCTTCCCCGTCTGCTGGCAATGATTCATGTGAACCGCTGTACACCCATCCCAGCTTTGCTCATCACCTGTATATCTACTCTGCTGATGCTGTGTGTCAGTGACATATACACCCTCATCAACTACGTTGGCTTCATCAACTACCTGTTTTATGGGGTCACTGTTGCCGGGCAGATTGTGCTTCGCATCAGAGAGCCAGACATATATCGGCCAATCAAAGTGAGCTTGGCATGGCCGGCAGTTTTCCTGATTTTCTGGGCTTTCCTGCTGATCTTCTCTCTGTACTCGGAGCCTGTGGTGTGCTGTATTGGTCTGGCCATCATGCTATCTGGGGTTCCTGTGTATCTGTTTGGCATCTATTGGGAAAATAAGCCCAAGAGCTTCAGTTCTTTTGTTGCCAGACTGACACACTTGGGGCAGAAGTTGTGCCTGGTGGTTTACCCTGGCGAGGACAGAGAAGATGGAAATGAAGACAGAGAGGAAGATGGATAG

Function

GO:

id name namespace
GO:0015804 neutral amino acid transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006865 amino acid transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015175 neutral amino acid transmembrane transporter activity molecular_function
GO:0015179 L-amino acid transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-586 Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and neutral amino acid transport. Predicted to act upstream of or within amino acid transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC7A8 (solute carrier family 7 member 8).

Ensembl:

ensembl_id ENSDART00000076523

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032745 lncRNA downstream 92627 38216345 ~ 38225373 (-) True XLOC_016682
TCONS_00033892 lncRNA downstream 123521 38192959 ~ 38194479 (-) True XLOC_016681
TCONS_00033891 lncRNA downstream 172299 38144162 ~ 38145701 (-) True XLOC_016680
TCONS_00032737 lncRNA downstream 176023 38138350 ~ 38141977 (-) True XLOC_016679
TCONS_00033384 lncRNA downstream 502627 37813663 ~ 37815373 (-) True XLOC_016662
TCONS_00032760 lncRNA upstream 660926 38998048 ~ 38998761 (-) False XLOC_016690
TCONS_00032761 lncRNA upstream 675798 39012920 ~ 39015104 (-) True XLOC_016690
TCONS_00032767 lncRNA upstream 745174 39082296 ~ 39086574 (-) False XLOC_016693
TCONS_00033386 lncRNA upstream 1273199 39610321 ~ 39612464 (-) True XLOC_016697
TCONS_00032775 lncRNA upstream 1397447 39734569 ~ 39737898 (-) False XLOC_016698
TCONS_00032753 mRNA downstream 5243 38287358 ~ 38312757 (-) True XLOC_016686
TCONS_00032751 mRNA downstream 29976 38285414 ~ 38288024 (-) False XLOC_016686
TCONS_00032752 mRNA downstream 30013 38286012 ~ 38287987 (-) False XLOC_016686
TCONS_00032750 mRNA downstream 33251 38282647 ~ 38284749 (-) True XLOC_016685
TCONS_00032749 mRNA downstream 33352 38282647 ~ 38284648 (-) False XLOC_016685
TCONS_00032756 mRNA upstream 5176 38342298 ~ 38363017 (-) True XLOC_016688
TCONS_00032757 mRNA upstream 648367 38985489 ~ 38992304 (-) False XLOC_016689
TCONS_00032758 mRNA upstream 649759 38986881 ~ 38992313 (-) True XLOC_016689
TCONS_00032759 mRNA upstream 660235 38997357 ~ 39015130 (-) False XLOC_016690
TCONS_00032762 mRNA upstream 678944 39016066 ~ 39017838 (-) True XLOC_016691
TCONS_00032743 other downstream 113207 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032691 other downstream 908843 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032658 other downstream 1644081 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 1646842 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 1985669 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032764 other upstream 725632 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 1033689 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 1398430 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032777 other upstream 1589839 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other upstream 1671616 40008738 ~ 40026622 (-) True XLOC_016700

Expression Profile

//