RNA id: TU591544


Basic Information

Item Value
RNA id TU591544
length 213
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G521764
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54042525 ~ 54042737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATACAGCCAAATAACATCATACCATCCAATTTTCTTAAAATACAGTGCTATGATATGTTGGCCATTATCGCACAGCACTACTCACAAGTCACTACCATCAGCTGTGACTTGGTTAATATGGTTGGAGTAGTTTGAAGTTACTCTCTCGTGGATACCTAATCCATCATCTTTTTCCAAAACAAAAACCGTTTTCAAGCAGGGAATGTGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU591532 lncRNA upstream 6917 54034910 ~ 54035608 (+) True LOC110526155
TU591388 lncRNA upstream 32180 54009215 ~ 54010345 (+) True G521609
TU591387 lncRNA upstream 33464 54007623 ~ 54009061 (+) True G521608
TU590549 lncRNA upstream 267001 53774086 ~ 53775524 (+) True G520810
TU590547 lncRNA upstream 272950 53769318 ~ 53769575 (+) True G520808
TU591568 lncRNA downstream 8534 54051271 ~ 54051519 (+) True G521788
TU591689 lncRNA downstream 214887 54257624 ~ 54257903 (+) True G521903
TU591699 lncRNA downstream 226889 54269626 ~ 54269868 (+) True G521913
TU591931 lncRNA downstream 280787 54323524 ~ 54328396 (+) True G522133
TU592071 lncRNA downstream 390350 54433087 ~ 54433300 (+) True G522263
XM_036980433.1 mRNA upstream 6862 54020112 ~ 54035663 (+) False LOC110526155
XM_021606804.2 mRNA upstream 6862 54020115 ~ 54035663 (+) False LOC110526155
XM_021606800.2 mRNA upstream 282929 53354778 ~ 53759596 (+) True LOC110526153
XM_036980429.1 mRNA upstream 840126 53111256 ~ 53202399 (+) False LOC110526152
XM_036980434.1 mRNA downstream 40008 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA downstream 40027 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA downstream 40027 54082764 ~ 54104736 (+) False LOC110526157
XM_036980435.1 mRNA downstream 40060 54082797 ~ 54104736 (+) True LOC110526157
XM_036980440.1 mRNA downstream 409717 54452454 ~ 54635157 (+) False brsk2b
TU591331 other upstream 87395 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 1387228 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1763527 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3120428 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 3307289 50720401 ~ 50735236 (+) True LOC118964907
TU591700 other downstream 227188 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 836962 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 877735 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1441512 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 1521011 55563748 ~ 55566499 (+) False LOC110526167

Expression Profile