RNA id: TU591689


Basic Information

Item Value
RNA id TU591689
length 280
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G521903
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54257624 ~ 54257903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaaccgaaaggttgcaagattgaataccCTCAGcttacaaggtacaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaatgatgGAGAGCATACTTGCAGAAGGGCAGATGCACTCACATACAGACAAAAGAAAAGATCAACAACCTATTATCCAATAATACATCCATTTCAGACATAGAAAACAGGAGGGTAACCATGGTTACTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU591568 lncRNA upstream 206105 54051271 ~ 54051519 (+) True G521788
TU591544 lncRNA upstream 214887 54042525 ~ 54042737 (+) True G521764
TU591532 lncRNA upstream 222016 54034910 ~ 54035608 (+) True LOC110526155
TU591388 lncRNA upstream 247279 54009215 ~ 54010345 (+) True G521609
TU591387 lncRNA upstream 248563 54007623 ~ 54009061 (+) True G521608
TU591699 lncRNA downstream 11723 54269626 ~ 54269868 (+) True G521913
TU591931 lncRNA downstream 65621 54323524 ~ 54328396 (+) True G522133
TU592071 lncRNA downstream 175184 54433087 ~ 54433300 (+) True G522263
TU592076 lncRNA downstream 176829 54434732 ~ 54434931 (+) True G522268
TU592104 lncRNA downstream 380042 54637945 ~ 54639251 (+) False brsk2b
XM_036980434.1 mRNA upstream 152888 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA upstream 152888 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA upstream 152888 54082764 ~ 54104736 (+) False LOC110526157
XM_036980435.1 mRNA upstream 152888 54082797 ~ 54104736 (+) True LOC110526157
XM_036980433.1 mRNA upstream 221961 54020112 ~ 54035663 (+) False LOC110526155
XM_036980440.1 mRNA downstream 194551 54452454 ~ 54635157 (+) False brsk2b
XM_036980442.1 mRNA downstream 194551 54452454 ~ 54636666 (+) False brsk2b
XM_036980439.1 mRNA downstream 194551 54452454 ~ 54639254 (+) False brsk2b
XM_036980441.1 mRNA downstream 194551 54452454 ~ 54639254 (+) False brsk2b
XM_036980443.1 mRNA downstream 194551 54452454 ~ 54639254 (+) False brsk2b
TU591331 other upstream 302494 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 1602327 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 1978626 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3335527 50911828 ~ 50922097 (+) True LOC110526128
TU586434 other upstream 3522388 50720401 ~ 50735236 (+) True LOC118964907
TU591700 other downstream 12022 54269925 ~ 54270259 (+) True G521914
TU592296 other downstream 621796 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 662569 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1226346 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 1305845 55563748 ~ 55566499 (+) False LOC110526167

Expression Profile