RNA id: TU591931


Basic Information

Item Value
RNA id TU591931
length 216
lncRNA type intronic
GC content 0.46
exon number 2
gene id G522133
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54323524 ~ 54328396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taagtgttacggtgcgtgaatgaggacccaaaagcgaatcaacttaaacagagcttctttaattaccaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttacagcaaacatgacggcagtctggttcaggcatgaatgacacaaacaaacaagaatccgacaaggacaggagcagaaacagagagagatattggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU591699 lncRNA upstream 53656 54269626 ~ 54269868 (+) True G521913
TU591689 lncRNA upstream 65621 54257624 ~ 54257903 (+) True G521903
TU591568 lncRNA upstream 272005 54051271 ~ 54051519 (+) True G521788
TU591544 lncRNA upstream 280787 54042525 ~ 54042737 (+) True G521764
TU591532 lncRNA upstream 287916 54034910 ~ 54035608 (+) True LOC110526155
TU592071 lncRNA downstream 104691 54433087 ~ 54433300 (+) True G522263
TU592076 lncRNA downstream 106336 54434732 ~ 54434931 (+) True G522268
TU592104 lncRNA downstream 309549 54637945 ~ 54639251 (+) False brsk2b
TU592105 lncRNA downstream 309549 54637945 ~ 54639251 (+) True brsk2b
TU592199 lncRNA downstream 342043 54670439 ~ 54674861 (+) True G522387
XM_036980434.1 mRNA upstream 218788 54082745 ~ 54104736 (+) False LOC110526157
XM_021606810.2 mRNA upstream 218788 54082764 ~ 54104736 (+) False LOC110526157
XM_036980436.1 mRNA upstream 218788 54082764 ~ 54104736 (+) False LOC110526157
XM_036980435.1 mRNA upstream 218788 54082797 ~ 54104736 (+) True LOC110526157
XM_021606804.2 mRNA upstream 287861 54020115 ~ 54035663 (+) False LOC110526155
XM_036980440.1 mRNA downstream 124058 54452454 ~ 54635157 (+) False brsk2b
XM_036980442.1 mRNA downstream 124058 54452454 ~ 54636666 (+) False brsk2b
XM_036980439.1 mRNA downstream 124058 54452454 ~ 54639254 (+) False brsk2b
XM_036980441.1 mRNA downstream 124058 54452454 ~ 54639254 (+) False brsk2b
XM_036980443.1 mRNA downstream 124058 54452454 ~ 54639254 (+) False brsk2b
TU591700 other upstream 53265 54269925 ~ 54270259 (+) True G521914
TU591331 other upstream 368394 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 1668227 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 2044526 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3401427 50911828 ~ 50922097 (+) True LOC110526128
TU592296 other downstream 551303 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 592076 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 1155853 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 1235352 55563748 ~ 55566499 (+) False LOC110526167
TU593827 other downstream 1585947 55914343 ~ 55915946 (+) True LOC110526169

Expression Profile