RNA id: TU592199


Basic Information

Item Value
RNA id TU592199
length 4147
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G522387
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54670439 ~ 54674861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGAACAGTCTCAGGGGTTCATTGCATAGATTATACACTAATCATAACCACGTCTGTTTTGCTTTGACTGTCAAAAACCTTACAACTAAGGCATATCAATGTACAAACATGAATGTAGAATTCACACAAAACCTTTCTCCCTTAGCCCGTTTTCCTGTGGATGAATAGCAAAGTGCAAAACATTACCGTTGAAATTGCTGTAGACCTAGACAGCTTAGTCTATAAATAACCTTTCAATTTCtttaaaggtaaataaataatggGCTTCTAACAACAAGTTTATGAGTGATGATTATAATAGTTTAGCTTATGATGAATTGAGGGAACCTAAGTAAACTTTGTATTCATTTAACCAACCATCTGCCAGTGGACAAATGAAACACTATACGCCAAatgtccactagatgtcagcaaaGTAAGTAAATCACGTGGCGCTAAAGTACAATATACCACTAACCATTTGGAAAAAATGTTAAGGGCTACTTCAACATCATAATTAGGCTATTTACTACTACAGAATCTCTACAGTCAGTATTTAGAACTTCAGTGTGTTTATTCTACAACAcaatgactacaaaatatctacaTATTGCTTTTCTTACAAATACAAATTACCAATAAGCTTTATAATACATTACAGCAAAGATCCAATAAtctgaaaatacatttttgctaGATCAATGATAACAGAAAATATGTTTTCATTTTAAGCTTAAACATTCCAAGTATAGAAAATGAGATTTAAATATGAATTATTCTTGCTAGATGACAAATCTAAGCCCAaagtcacatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgaaatgtaaaaattccctgtcttaggtcagttaagatcaccactttattttaagaatgtgaaatgtcagaataatagtagagagaattatttatttcagcttttatttctttcatcacattcccagtgggtcagaaatctACATAcagtcaaatagtatttggtagcattgcctttaaattgtttattaacttgggtcaaacgtttatggtagccttccacaaacttcccacaacaagttgggtgaatgttggcccattcctcttgacagagctggtgtaacagtcaggtttgtaggcctccttgctcacacatgccttttcaattctgcccacaaatgtcttatgggattgaggtcagggctttgtgatggccactccaataccttgactttgtagtccttcagccattttgccacacctttggaagtatgcttggggttttgtccatttgcaacttagctttaacttcctgactgatgtcttgagatgagatatccatgtaattttccttcctcataatgccatatattttgtgaagtgcaccagtccatcctgcagcaaagcactcccacaacatgatgctgtcacccctgtgcttcacggttgggatggtgttctccagCTTGTAAGCATCCCCCCTTttaataacgatggtcattatggccaaacagtatttttgtttcatcagaccagaggccatttctacaaaaagtatgatctttgtccccatgtgtagttgcggTTGTagttatggcggttttggagcagtggcttcaggTTATGTAAATTTcggactgtggatatagatgcttttgtacctgtttctgcgagcctcttcacaaggtcctttgctgttgttctgggattgatttgcacttttcacacaaaagtacgttcacctctaggagacagaacgcgtttccttcctgagcagtgtgacggctgcgtggtcccatggtgtttatacttgcgtactattgtttgcacagatgaacgcggtatcttcagacatttggaaattgaaataatctgtctgtaaacaattgtttacatgcacaaagtagatgtcctaaccgacttgccaaaacaatagtttgttaacaagacatttgtggggtggttgaaaaacgagtttcaacctaagtgtatgtaaacttccaacttcaactgtacattagaACCAATTACCTTCGCctatgcttgttttttttttgttgtggatGACCAGTACAAAATCCATCTATACTATCTATACTAGGACTTCACCTAAAATATTGGGTATTTGGCCACAAGTGACCTCAAATGATGGACTAAGAGATGAGGCCCCTTGCTGCCTTCTGAAGTTCTGAACCCCTGGTATAATAACGTTAGGCTGGGACTCTATCCTGTCGCGGATTTGGACAACTCACCATCTAAACGGTCATTACAGACTGAGCCTTTTGCTCTAGAAACGAAGATACACTaaatggccaaaagtatgtggacacccctttaacttagtggatttggctattttagacacaccagttgctgacaggtatataaattcgagcacacagccatgcaatctccatagccaaacattggcagtagaatggcctgtattgaagagctcagtgactttcaacgtggcaccgtcataggatgccaactttccaacaCTCTGTAGcagtggagtgatgaatcacgcttcaccttcTGGTaatccgacagacgaatctggttttggcggatgccaggagaacgcttccTGCCCAAATgcctagtgccaactgtaaagtttgatggaggaggaataatggtctggggctggttttcatggttcgggctatgcCCCTtagcgctacagcatacaatgacattctagatgattatgtgcttccaactttgtggcaacagtttggggtaggccctttcctgtttcagcatcacAATGCCTGTgcgcaaagcgaggtccatacagaaatggtttgtcgagatcgttgtggaagaatttgactggcctgcacagagccctgacctcaaccccatcaaacacctttgggatgaattggaacgttgaCTGCGAGCCAGCCTTAACCGCCAAATATCAGTGCCCGTCCTCACTAACGCtcgtagctgaatggaagcaagtcccggcagcaatgttccaacatctaatggaaagccatcccagaagagtggaggcaaaggggggaccaactccatattaatgctcatgattttggaatgagatgttcgataagcaggtgtccacatacaaaaATAAAACTATAGTAAAATAAGACTATACTAACAAATATTTTACAAAGGCTCTCTAAGCAAACATAATGTCCATTGTTAGAATATTACAAAACTACTAAAATGAAGTAAGCTGTAATGCTTTCACGATGATGGGAGAGAATGTGGCACTGTCCTTGGCACTCCACTATGGCAGCTTCTCCTACAACATAACACTATGTTTCTGCAATGTCAGTCGTGTAGACAACTTAGAACTTAGAATGCATTGCAGTGCTCTAGAATCGAACTGGCCATTCTGGGTCTCCTGGCTCTCCTTTTTCTCCTGTCTGGGCCCTGTGTTTAGGCAGAGCCATGGCCTGCTCCAGAAGCCTGGCCAGGTACCCATCCTCCGCCCTCTCCCCCACTGAACGGCTCTCACTCTGGGCCAGGCCCGTAGGCCGCTGGGAAGCCTGGGCTAAGGGTGCTGACTGAGTCCGGGGGACCCTGCAGGGTGGCTGGGGAGGGCTAAGGGATGAAGGGGAAACTGGGGCAGTCACGGTCGACTCCTCCATGGGGCTTTGTGGAGGTGTGTTTGTACCCTGTTGAACTACGACCTGTGTCTCTGGTAAAGCCACTGGACCAGAGGAGCTCTCAACACTTTTTTCTTTGTGGAGTACCATAAGAATGGCAGGTTGTCCCATAACATTGGGCTCATTACCCCCTGGTGGCTCATAAGGTGGTGGCCCAGCCCCAGCCTGGGGAGGCCCATCGGGGGTAACTTGAGCCTGGATGGTGTGGATGAGAATGGGGTCTGGAGATGGAAGAGAtacttcctcctcatcctcttcctccatgttgAGAGCTTCCTTGTCCTTCCTGTCCTCCTTGGAAGGGCTGTCGTCTTGGGAGATGATGTCTGGCTGGTAGGTGATGATGTGGAGACCCAGACCCCCTGCTCCTGGTCGTTTGGATCCCTGGTCAGGGGAGACTCCCCTGGGGGGCTTGAGAGGGGTGAGCAGAACAGGTAGCTCCAAACCCAGGGCCTTCTGTGGCAGCTCATCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU592104 lncRNA upstream 31188 54637945 ~ 54639251 (+) False brsk2b
TU592105 lncRNA upstream 31188 54637945 ~ 54639251 (+) True brsk2b
TU592076 lncRNA upstream 235508 54434732 ~ 54434931 (+) True G522268
TU592071 lncRNA upstream 237139 54433087 ~ 54433300 (+) True G522263
TU591931 lncRNA upstream 342043 54323524 ~ 54328396 (+) True G522133
TU592244 lncRNA downstream 1033 54675894 ~ 54679030 (+) True G522430
TU592266 lncRNA downstream 74444 54749305 ~ 54749788 (+) True G522451
TU592310 lncRNA downstream 87527 54762388 ~ 54762599 (+) True G522492
TU592298 lncRNA downstream 104132 54778993 ~ 54779572 (+) True G522480
TU592321 lncRNA downstream 105892 54780753 ~ 54781190 (+) True G522503
XM_036980439.1 mRNA upstream 31185 54452454 ~ 54639254 (+) False brsk2b
XM_036980441.1 mRNA upstream 31185 54452454 ~ 54639254 (+) False brsk2b
XM_036980443.1 mRNA upstream 31185 54452454 ~ 54639254 (+) False brsk2b
XM_036980442.1 mRNA upstream 33773 54452454 ~ 54636666 (+) False brsk2b
XM_036980440.1 mRNA upstream 35282 54452454 ~ 54635157 (+) False brsk2b
XM_021606819.2 mRNA downstream 118264 54793125 ~ 54954478 (+) False LOC110526161
XM_021606822.2 mRNA downstream 128163 54803024 ~ 54954478 (+) False LOC110526161
XM_021606823.2 mRNA downstream 204590 54879451 ~ 54954478 (+) False LOC110526161
XM_021606824.2 mRNA downstream 245197 54920058 ~ 54954478 (+) False LOC110526161
XM_036980445.1 mRNA downstream 245611 54920472 ~ 54954478 (+) False LOC110526161
TU591700 other upstream 400180 54269925 ~ 54270259 (+) True G521914
TU591331 other upstream 715309 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 2015142 52651940 ~ 52655297 (+) True G519603
TU589106 other upstream 2391441 52278493 ~ 52278998 (+) True LOC110493840
TU586543 other upstream 3748342 50911828 ~ 50922097 (+) True LOC110526128
TU592296 other downstream 204838 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other downstream 245611 54920472 ~ 54940873 (+) True LOC110526161
TU593407 other downstream 809388 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 888887 55563748 ~ 55566499 (+) False LOC110526167
TU593827 other downstream 1239482 55914343 ~ 55915946 (+) True LOC110526169

Expression Profile