RNA id: TU592900


Basic Information

Item Value
RNA id TU592900
length 258
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G523060
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55027659 ~ 55027916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcctggacttcctgacgggctgcccacgggtggtgagggtaggaaacaacatctccctcCACTGATCctgaacactggggccccacaagggtgcgttctcagccctctcctgtactccctgttcacccatgacttcgtggcaatgcacgcctccaactcaatcatcaagattGCAGACGACgttacagtggtaggcttgattaccaacaacgatgagacagcctacagggaggaggtgagggccctcggagtgttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU592893 lncRNA upstream 6018 55021397 ~ 55021641 (+) True G523053
TU592328 lncRNA upstream 237923 54789509 ~ 54789736 (+) True G522510
TU592324 lncRNA upstream 242875 54784542 ~ 54784784 (+) True G522506
TU592321 lncRNA upstream 246469 54780753 ~ 54781190 (+) True G522503
TU592298 lncRNA upstream 248087 54778993 ~ 54779572 (+) True G522480
TU592930 lncRNA downstream 19425 55047341 ~ 55047561 (+) True G523090
TU592931 lncRNA downstream 20703 55048619 ~ 55048934 (+) True G523091
TU592962 lncRNA downstream 42743 55070659 ~ 55071002 (+) True G523122
TU592972 lncRNA downstream 106860 55134776 ~ 55135607 (+) True LOC110526162
TU593086 lncRNA downstream 224033 55251949 ~ 55257369 (+) True G523235
XM_021606822.2 mRNA upstream 73181 54803024 ~ 54954478 (+) False LOC110526161
XR_005052418.1 mRNA downstream 38284 55066200 ~ 55068243 (+) True LOC118965082
XR_002473894.2 mRNA downstream 99140 55127056 ~ 55135622 (+) False LOC110526162
LOC110526930 mRNA downstream 323813 55351729 ~ 55364742 (+) True LOC110526930
XM_036980447.1 mRNA downstream 347180 55375096 ~ 55448136 (+) False LOC110526163
XM_036980448.1 mRNA downstream 347182 55375098 ~ 55448136 (+) False LOC110526163
TU592296 other upstream 86786 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 86786 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 757400 54269925 ~ 54270259 (+) True G521914
TU591331 other upstream 1072529 53925942 ~ 53955130 (+) True G521552
TU589275 other upstream 2372362 52651940 ~ 52655297 (+) True G519603
TU593407 other downstream 456333 55484249 ~ 55484607 (+) True G523529
TU593613 other downstream 535832 55563748 ~ 55566499 (+) False LOC110526167
TU593827 other downstream 886427 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 1082363 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 2548168 57576084 ~ 57581070 (+) True G525645

Expression Profile