RNA id: TU593695



Basic Information


Item Value
RNA id TU593695
length 298
lncRNA type intronic
GC content 0.46
exon number 1
gene id G523793
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55681260 ~ 55681557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTTTGGGTTGACCCCTCTTCTTCACTTTCTATACCTCCATTCCGCTCTCttttcctttccctctctttatcGTTCCTCTCTCGCACACTAGGATGTTACCATCAgtgcctggtctctctcttctctttccccttgTTCCTCTCATCTTCCCTGTTCCATtcatcccttctccctccctcctttttccacTTTTCCCACTTCTAATGCATTGTCTATTTTTCATGTTTCTCTCTTTTCTACAttcaccgtctctctttctccctgatcGTAACCACCTCTCAGCAAGCCCCTTTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU593694 lncRNA upstream 881 55680174 ~ 55680379 (+) True G523792
TU593688 lncRNA upstream 15243 55665810 ~ 55666017 (+) True G523786
TU593687 lncRNA upstream 18075 55662941 ~ 55663185 (+) True G523785
TU593647 lncRNA upstream 44302 55589340 ~ 55636958 (+) True G523746
TU593665 lncRNA upstream 60309 55618384 ~ 55620951 (+) True G523763
TU593697 lncRNA downstream 5212 55686769 ~ 55687061 (+) True G523795
TU593700 lncRNA downstream 17787 55699344 ~ 55699597 (+) True G523798
TU593703 lncRNA downstream 20301 55701858 ~ 55702067 (+) True G523801
TU593704 lncRNA downstream 21249 55702806 ~ 55703719 (+) True G523802
TU593705 lncRNA downstream 22847 55704404 ~ 55704668 (+) True G523803
XM_021606837.2 mRNA upstream 113093 55563439 ~ 55568167 (+) False LOC110526167
XM_021606831.2 mRNA upstream 233124 55411346 ~ 55448136 (+) False LOC110526163
XM_021606840.2 mRNA downstream 222507 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA downstream 222507 55904064 ~ 55916081 (+) False LOC110526169
XR_002473897.2 mRNA downstream 283665 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 283727 55965284 ~ 55968091 (+) False LOC110526172
XM_036980459.1 mRNA downstream 289883 55971440 ~ 55980904 (+) False LOC110526171
TU593613 other upstream 114761 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 196653 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 740387 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 740387 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1411001 54269925 ~ 54270259 (+) True G521914
TU593827 other downstream 232786 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 428722 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1894527 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1922551 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1940291 57621848 ~ 57627619 (+) True fbxo3

Expression Profile