RNA id: TU593728


Basic Information

Item Value
RNA id TU593728
length 328
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G523826
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55746790 ~ 55747117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctgtactttgctccgttcacctttcccttgatcctgactagtctcccagtccctgctgctaaaaaacatctccacagtatgatgctgccaccaccatgcttcacagtagggatggtgccaggtttcctccagatgtgatgcttggcattcaggccaaagagttcaatattggtttcatcagacccgtgaatcttgtttctcatggtcagagtctttaggtaccaaggcccttctcccccaattgctcagtttggctctagaaagagtcttggtggttccaaacttcttccatttaagaatgatggaggccactgtgttcttggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593727 lncRNA upstream 1891 55744693 ~ 55744899 (+) True G523825
TU593724 lncRNA upstream 9356 55737182 ~ 55737434 (+) True G523822
TU593719 lncRNA upstream 17842 55728731 ~ 55728948 (+) True G523817
TU593718 lncRNA upstream 20021 55726538 ~ 55726769 (+) True G523816
TU593711 lncRNA upstream 30717 55715820 ~ 55716073 (+) True G523809
TU593729 lncRNA downstream 1751 55748868 ~ 55749089 (+) True G523827
TU593730 lncRNA downstream 2033 55749150 ~ 55749552 (+) True G523828
TU593731 lncRNA downstream 2691 55749808 ~ 55750023 (+) True G523829
TU593747 lncRNA downstream 38113 55785230 ~ 55785515 (+) True G523845
TU593751 lncRNA downstream 42862 55789979 ~ 55790212 (+) True G523849
XM_021606837.2 mRNA upstream 178623 55563439 ~ 55568167 (+) False LOC110526167
XM_021606831.2 mRNA upstream 298654 55411346 ~ 55448136 (+) False LOC110526163
XM_021606840.2 mRNA downstream 156947 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA downstream 156947 55904064 ~ 55916081 (+) False LOC110526169
XR_002473897.2 mRNA downstream 218105 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 218167 55965284 ~ 55968091 (+) False LOC110526172
XM_036980459.1 mRNA downstream 224323 55971440 ~ 55980904 (+) False LOC110526171
TU593613 other upstream 180291 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 262183 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 805917 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 805917 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1476531 54269925 ~ 54270259 (+) True G521914
TU593827 other downstream 167226 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 363162 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1828967 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1856991 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1874731 57621848 ~ 57627619 (+) True fbxo3

Expression Profile