RNA id: TU593730


Basic Information

Item Value
RNA id TU593730
length 403
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G523828
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55749150 ~ 55749552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGTAAACTTCCTgagcgatttccttcctctccggcaactgagttaggaaggactagggttgcaaagggtcggaaacctTCCGGGAAATTTCCATGGgaaaccttttttgtgggatacacataaggcaattctaggtcttgtggcatattttggctAAACtgtccccaattcaatggaattgcaaccctctgcatgcacagtgcattcttccatcacatgtgcagtgcactcttccatcacatgtacagctgattctcaagatcttgcacactaatgagatgctattgagcccacacaactacactgtctgagccaaggactaaatgctttctggtaagttttgattacaatactgggtggggtcaatatattttatatgacatacattattgttttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593729 lncRNA upstream 61 55748868 ~ 55749089 (+) True G523827
TU593728 lncRNA upstream 2033 55746790 ~ 55747117 (+) True G523826
TU593727 lncRNA upstream 4251 55744693 ~ 55744899 (+) True G523825
TU593724 lncRNA upstream 11716 55737182 ~ 55737434 (+) True G523822
TU593719 lncRNA upstream 20202 55728731 ~ 55728948 (+) True G523817
TU593731 lncRNA downstream 256 55749808 ~ 55750023 (+) True G523829
TU593747 lncRNA downstream 35678 55785230 ~ 55785515 (+) True G523845
TU593751 lncRNA downstream 40427 55789979 ~ 55790212 (+) True G523849
TU593761 lncRNA downstream 51314 55800866 ~ 55869285 (+) True G523856
TU593804 lncRNA downstream 119810 55869362 ~ 55869565 (+) True G523896
XM_021606837.2 mRNA upstream 180983 55563439 ~ 55568167 (+) False LOC110526167
XM_021606831.2 mRNA upstream 301014 55411346 ~ 55448136 (+) False LOC110526163
XM_021606840.2 mRNA downstream 154512 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA downstream 154512 55904064 ~ 55916081 (+) False LOC110526169
XR_002473897.2 mRNA downstream 215670 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 215732 55965284 ~ 55968091 (+) False LOC110526172
XM_036980459.1 mRNA downstream 221888 55971440 ~ 55980904 (+) False LOC110526171
TU593613 other upstream 182651 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 264543 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 808277 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 808277 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1478891 54269925 ~ 54270259 (+) True G521914
TU593827 other downstream 164791 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 360727 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1826532 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1854556 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1872296 57621848 ~ 57627619 (+) True fbxo3

Expression Profile