RNA id: TU593812


Basic Information

Item Value
RNA id TU593812
length 231
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G523904
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55882971 ~ 55883201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctcaacgtcaacagtgaagaggtgactggccttctaggcagagttgcaaaggaaaagccatatctcagactggccaataaaaagaaaagattaagatgggcaaaagaacacagacactggacagaggaactctgcctagaaggccagcatccccgagtcgcctcttcactgttgacgttgagactggtgttttgcaggtactatttaacgaagctgccagttgaggact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU593804 lncRNA upstream 13406 55869362 ~ 55869565 (+) True G523896
TU593761 lncRNA upstream 13686 55800866 ~ 55869285 (+) True G523856
TU593751 lncRNA upstream 92759 55789979 ~ 55790212 (+) True G523849
TU593747 lncRNA upstream 97456 55785230 ~ 55785515 (+) True G523845
TU593731 lncRNA upstream 132948 55749808 ~ 55750023 (+) True G523829
TU593816 lncRNA downstream 6496 55889697 ~ 55889936 (+) True G523908
TU593822 lncRNA downstream 10475 55893676 ~ 55893945 (+) True G523914
TU593823 lncRNA downstream 11863 55895064 ~ 55895327 (+) True G523915
TU593846 lncRNA downstream 43166 55926367 ~ 55927215 (+) True G523936
TU593851 lncRNA downstream 47527 55930728 ~ 55940668 (+) True G523939
XM_021606837.2 mRNA upstream 314804 55563439 ~ 55568167 (+) False LOC110526167
XM_021606831.2 mRNA upstream 434835 55411346 ~ 55448136 (+) False LOC110526163
XM_021606840.2 mRNA downstream 20863 55904064 ~ 55916081 (+) False LOC110526169
XM_036980457.1 mRNA downstream 20863 55904064 ~ 55916081 (+) False LOC110526169
XR_002473897.2 mRNA downstream 82021 55965222 ~ 55968091 (+) False LOC110526172
XR_005052166.1 mRNA downstream 82083 55965284 ~ 55968091 (+) False LOC110526172
XM_036980459.1 mRNA downstream 88239 55971440 ~ 55980904 (+) False LOC110526171
TU593613 other upstream 316472 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 398364 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 942098 54879699 ~ 54940873 (+) False LOC110526161
TU592297 other upstream 942098 54920472 ~ 54940873 (+) True LOC110526161
TU591700 other upstream 1612712 54269925 ~ 54270259 (+) True G521914
TU593827 other downstream 31142 55914343 ~ 55915946 (+) True LOC110526169
TU593913 other downstream 227078 56110279 ~ 56120734 (+) True LOC110526175
TU595721 other downstream 1692883 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1720907 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1738647 57621848 ~ 57627619 (+) True fbxo3

Expression Profile