RNA id: TU594074


Basic Information

Item Value
RNA id TU594074
length 3669
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G524139
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56278248 ~ 56281973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAAAAACATCGGTATTTTATCACATTTGGACTGTAGGAATATTATAACATCCTGAAATACACTTCTACGGAGTTGTTTTAATATCAACTTTAAGAGACAGTTCTATTTTGATTTCGCTCCCTTAATGACCCTCCAGTGTTCATGAAAATGAATggttcaaatacacacacatactcggACAGCATGAACATTTCGTTACATTTGAACAGAAAAATAACCCATGTCATTTCCATGTGGATGTTCATGGCAAACGTACTTAgtgatggtacaatgattccatGGCTGAAACATATTACTGTaaccaaaacatacacacacacacacacacacatacacacacaccacatatgctgctgctactgtgtattatctatcctgttgcctaaatcactttaaccctacctatatgtacagcacatgcctacctcaattaccttgtacctctgcacatcgactcggtacaggtactccctgtatatagccatgttgtttttatttgttattcactgtgtatttattccttgtgtcactatttaaatgttgtattacatatatttttaatctttaactgcattgttggaaatgaacgcgtaagtaagcatttcacagttagTCAACACATGTTGTCTACGAAGCGTGTGAAAAATAAAACTGGATTTGATTTGTTTATGTATGTTATATTCATATATACAATGGACCCTTAGTGGCTACCCAATCTATACCCAAGAAGGCACAACTTTAAAATGTACACAATAGTTAAACATGTCATTATAATGATTTTCAAGTTGTgaacttgatttgatttgtatatgTTTGTTATATTTGGGGCCGTATGTATCAAGCATGTCAGAGTAGGAGTGCCGATAAAGGATcggttttgccttttagatcaacAATGAATAAGATAAACTGGACAGGGGaattgatcctagatcagcactcttgaGACACTTCGCGTGAACAACAGGTTAGTGTTCaaagacagaccagctatagtTGTCCATTTTCTGGACCTTTTCACTGTAACTAGGCACACCTTGAAGCAGGCCTCATGTCTATACTAAAGATGCGTCTAGATACTGTGGGCAGGGCTAAGCCCCATTTTTGATATTAGGGCATTGTGAAAAGCCTTTTCATTGACTTTGTCTTTTCAGTTCAATCACAGTCCATCCATCACCATAATATGTTACCATAATGTAGTCAAATATCATTGTTGTGGTCTTGAGGCTACACAGGCTATACGGATGACTTAGAATGgctttttgtattattttttttacagtctcATCATTATGCGTAGTGCTTTAGGCCGGGACATAACACTGATTGATATTGTCAAAAGAAGCCATCCCTTCGGAGTTATACTACGGATTGGGTAGATAACTAGGGAGAAGGTCAGCTTTGCTAACAGTATACAGTATCTAACAGTATAGAAACATTGTAATATCCTAGAAAAACTTGATGTTGAAAGATACCTCTTTCTCTTTGTTTTCCCTTAAGTCATTGCTTATTCAACTACATTTTGGGAATCCAGAGTATTTTAGCTTCACTATGGCAAGACACAACAACTTCTTGCTAGGCACACCTAAATGATACCATTAACTGCTGAGGGATTTAGCCTTAAACTATTACACTTTGACAGACATCAATTATCAGGATGTGCATGGGCTTTGTGTTTGCTTCAAAATGTAATTTCTGCAATCACTGGTAAATAACCAGTGATGCTTAAAGAATTTGATAACAAAGTACATTTTAGCAGAGGCTAGCATGGTATATTTGATAGGGTTTTCTGAACGTTGAGGAAAATCTTGACCACAAATATTTTGTAATAGAGGAATATAGCGTAACCAATAAGAATAGACATGTATAtggagtagtggtggtggggggtatAATTAGGATTTTCTATGTAAGCAGATGAAGAACAGACACTGATATGAGAGCACTTTTCATCTCCAGATTCAAGTGTTCTATGTCTTTTCAGACAGTACAATGAAATATGTATGTTGTCTTTTTATGGAAGAGAATGGAAATGCAGTCCATTGTCTATGTCAATAATACTGTACATAATATTAGGTTCCACCCCTTTCAATAACATAAAAAGAATAAAGAACTCTGGTGTTGTTGGTGCCCTGAAGGTCATCATGGGCCGACATCACAATAATAGACAGCACGCCCAGGAGCGAGAATTACTAAGTTCTTGGCTGTTGACTGAACGTAAGAAGGATGGGCTTAAACATAAGCTGGCATTTATGTTTTAAAAAAAGCAAACACTTGATTTGTCTGACAAAGCTGCAACAAGCAAGCAGTGCATACAACTATGTGTCTTTGAAAGCAGACCAAAAGAGAGCGGGCGGATGTTCTACGAGCAGTTATATGAGAACAGCACAATAAGAAACTCaattgaaaaatctcaaatctaaatTGAAGGGCAAAATCACGGATCTTGTTGGAGCAgcatccacaacatgttcaaggTTCATGTAAATAAAAATGGAACACGTCTTCTGAAGATATGAACATTGTTAACAGTCAAACTAAGTAGAATTGTCTCAAATGTCATGATTTGCGACACATTGTTGGACACAGAAATATAAACATCGGCATATGTTCTATTCAATGTGTATCTATTTTCACAACATCTCCAGAGGAAGTGTACACCACGTACAATAAAATCAGGGTTTAAACTTTGGTTAAGTAATAGTCAAGgctaggtttaaaaaaatatataacacacATCCATGTTACTTTGCATACAGTTAACTTTAAATGGATCGAGGTTTGTGTCAACAAAGCAGCTGGTCAATTATATCACTAACATAATAAAATTTGCATCTTAGGGAAAACCCTTTGTGTCCCTTCGGTAGAtcattctgtgtgtttgtgtgtgtgtatgcgcaccTGACATCttttgtgtttgagagtgtgtgaACAGATGCTTACAGTATGTGGAAAAAAAAGAGGACAAAAATAATCAGATATGTTTCATGTATATTGTAGTCATTTTGTCTCGTTTTTGACTCCCTACTCCTTTCTGAATTGCAATATAGTTGTCATAACATGATGTTGTGATTTGAAAGACATTGTAGCTGGTAGCTGAGCGAGCAGCTCCGCCTCAAGCCAGCCTTATTTTGGTTGACAATACGAAACAAGATAAAAATAGATCAACTCATTCTGCTGGCTGCACGTAAGCAGAGAGAAACTCCACCATTTGGTTATCAATGACAACTACAAAGCAGACCCAACTAAAACATTGTCGACATTACAACCAAACAATTTTTCTCTATCTTATTCAAATATTCACATCTGTTCTTTACAAGACACTGTTTCACACATaaagaaaaacatatttcaactcGGATAAGTCTCTAGTTTCATCACTTCATATATAGGTATATATGTAATAATTAAGGCAATCATTTGGGCCATGACTTACTCATTTCCATGCCTCCAGGCTTTCTAGGAAAGATTTTTGTTCCTTGTGCGCTCCGTATAATGTCCCAATGTCTAATTTGTCCATTCAAACTTCTGATGTCCGATCGCTGGGTTCACTCTTGCAGTAGATCTGTGGTTATCGATGTCCGTTGTCTCACCCCAGATGACCAGTCATAATATATGCTCTTTCTCTGCCAATTCCAAGAGTACCAGCCAGCACATCATCTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594032 lncRNA upstream 48596 56208278 ~ 56229652 (+) True LOC110526177
TU594000 lncRNA upstream 136042 56140696 ~ 56142206 (+) True G524074
TU593999 lncRNA upstream 137770 56139929 ~ 56140478 (+) True G524073
TU593995 lncRNA upstream 150427 56127519 ~ 56127821 (+) True G524069
TU593879 lncRNA upstream 287329 55989194 ~ 55990919 (+) True LOC110526173
TU594173 lncRNA downstream 42964 56324937 ~ 56325170 (+) True G524199
TU594293 lncRNA downstream 302303 56584276 ~ 56589481 (+) True G524303
TU594362 lncRNA downstream 395136 56677109 ~ 56756337 (+) True G524371
TU594512 lncRNA downstream 606576 56888549 ~ 56889643 (+) True G524519
TU594514 lncRNA downstream 610413 56892386 ~ 56892635 (+) True G524521
XM_021606855.2 mRNA upstream 44148 56185132 ~ 56234100 (+) False LOC110526177
XM_021606851.2 mRNA upstream 157501 56020625 ~ 56120747 (+) False LOC110526175
XM_036980465.1 mRNA upstream 157501 56036679 ~ 56120747 (+) False LOC110526175
XM_021606850.2 mRNA upstream 157501 56036692 ~ 56120747 (+) False LOC110526175
XM_036980463.1 mRNA upstream 288794 55982412 ~ 55989454 (+) False LOC110526173
LOC110525039 mRNA downstream 39730 56321703 ~ 56328003 (+) True LOC110525039
NM_001159338.1 mRNA downstream 50732 56332705 ~ 56355234 (+) False nr1h3
XM_036979135.1 mRNA downstream 50746 56332719 ~ 56357492 (+) False nr1h3
XM_021604940.2 mRNA downstream 50757 56332730 ~ 56357492 (+) False nr1h3
XM_021604946.2 mRNA downstream 50757 56332730 ~ 56357492 (+) False nr1h3
TU593913 other upstream 157514 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 362302 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 711749 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 793641 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 1337375 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 1294111 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1322135 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1339875 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1357501 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 1421485 57703458 ~ 57710340 (+) True G525912

Expression Profile