RNA id: TU594173


Basic Information

Item Value
RNA id TU594173
length 234
lncRNA type intronic
GC content 0.50
exon number 1
gene id G524199
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56324937 ~ 56325170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGtaagggctctgggagtgtggtgccaggaaaataacctctcactcaacatcaacaaaactaaggagattatagtggacttcaggaaaccgcagagggagcatcccccatccacatcgatgggactgccgtggagaaggtggaaagcttcaagttccttagcgtacacatcactgacaaactgaaatggtccacccacacagacagtgtgttgaagaaggcgcaacagtgcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594074 lncRNA upstream 42964 56278248 ~ 56281973 (+) True G524139
TU594032 lncRNA upstream 95285 56208278 ~ 56229652 (+) True LOC110526177
TU594000 lncRNA upstream 182731 56140696 ~ 56142206 (+) True G524074
TU593999 lncRNA upstream 184459 56139929 ~ 56140478 (+) True G524073
TU593995 lncRNA upstream 197116 56127519 ~ 56127821 (+) True G524069
TU594293 lncRNA downstream 259106 56584276 ~ 56589481 (+) True G524303
TU594362 lncRNA downstream 351939 56677109 ~ 56756337 (+) True G524371
TU594512 lncRNA downstream 563379 56888549 ~ 56889643 (+) True G524519
TU594514 lncRNA downstream 567216 56892386 ~ 56892635 (+) True G524521
TU594462 lncRNA downstream 568075 56893245 ~ 56895396 (+) True G524469
XM_021606855.2 mRNA upstream 90837 56185132 ~ 56234100 (+) False LOC110526177
XM_021606851.2 mRNA upstream 204190 56020625 ~ 56120747 (+) False LOC110526175
XM_036980465.1 mRNA upstream 204190 56036679 ~ 56120747 (+) False LOC110526175
XM_021606850.2 mRNA upstream 204190 56036692 ~ 56120747 (+) False LOC110526175
XM_036980464.1 mRNA upstream 335483 55982412 ~ 55989454 (+) False LOC110526173
NM_001159338.1 mRNA downstream 7535 56332705 ~ 56355234 (+) False nr1h3
XM_036979135.1 mRNA downstream 7549 56332719 ~ 56357492 (+) False nr1h3
XM_021604940.2 mRNA downstream 7560 56332730 ~ 56357492 (+) False nr1h3
XM_021604946.2 mRNA downstream 7560 56332730 ~ 56357492 (+) False nr1h3
XM_036979136.1 mRNA downstream 7560 56332730 ~ 56357492 (+) False nr1h3
TU593913 other upstream 204203 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 408991 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 758438 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 840330 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 1384064 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 1250914 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1278938 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1296678 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1314304 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 1378288 57703458 ~ 57710340 (+) True G525912

Expression Profile