RNA id: TU595657



Basic Information


Item Value
RNA id TU595657
length 1016
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G525581
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57199932 ~ 57200947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACACAATATCCTTCTGAATTTCTACAAAAAATAATCAGTTTACAACCACTTCTAACTGTCGACCCTTGGAAAGAGCAGAAGGCCCGAGGCTTATTTACGGCACTTGGACTTGGGATATCGGAGTGATCTGGGTAGGAGTAGAAGGGGTGGAAGGGGATACAGTGTTTGCAACAGACAAACCAAGAGACCCATCAGGCATCAGAATGGTTCAGACTAACCCAGATCTGTCAGACTCTCTGCTCCTGAAAAGATCCCCCTCCCCTTTGGAAACTGGAGCAGACAGCTGACACAGTTTTTTCTTTTGTTTCCCCTTTGATTTCTTTTTGAGCACTCTCAtttcatgtttttgttgtttttggttTTTGAACTTGTGGAATTTACTGTTTTCTGTTGTATTTGAAGAGGATATGATTGACTGCATTCTAGTGTCCTGTTGGTCCGGAGGATAATGGAAAGGATGGGTTTTTAAACAGAAGGCAGGAGCTTAGTGGCTTCGTGGTGACTGTTGGGTGAGATGAAGAGAAATTGAGCAGTAGAGCTGAATGCTGATCCCTGTGGGTTCCAGTCCTGCTGGGTTTTAAAGTGAGAGAAAAACAGTGAGCAAAACGGCAGCATTGGATTTGGCCACCTTGATCCTCATACAGCATTGTGTTCGATAAGCTCATCGGTTTCAGCTTTCACCTTCTATCTGTGCTTTTTATTACTCGGTTCTCCAACATACAATAATCAGCAGCTTGTGTATGAATTAAATCAAGACCACAGTTAAATAGTGTAACTACAGTTTATACAGTAGAAATCTCCACACACAGTTCTCCAGTTTTTCTACCGATCACTTTCCACAGCCAATGACGTTTTTGAGacttccagggtttttattttctGTGCAATTTAAGGGCAATATGTAATCACATGACATACTCAACAGATTTAGTTATACTGCTTTACACTGACCACACAACGATAATCAAACTGCACAACTGTTCACAGAtcatctcaaaatcattgtaaaGACATTA

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU595703 lncRNA upstream 5948 57193774 ~ 57193984 (+) True G525627
TU595701 lncRNA upstream 31338 57168358 ~ 57168594 (+) True G525625
TU595699 lncRNA upstream 41124 57158586 ~ 57158808 (+) True G525623
TU595691 lncRNA upstream 55500 57144214 ~ 57144432 (+) True G525615
TU595689 lncRNA upstream 56813 57142683 ~ 57143119 (+) True G525613
TU595659 lncRNA downstream 709 57201656 ~ 57201826 (+) True G525583
TU595739 lncRNA downstream 32147 57233094 ~ 57233306 (+) True G525663
TU595743 lncRNA downstream 35901 57236848 ~ 57237071 (+) True G525667
TU595747 lncRNA downstream 39718 57240665 ~ 57240883 (+) True G525671
TU595775 lncRNA downstream 76648 57277595 ~ 57278035 (+) True G525698
XM_036980546.1 mRNA upstream 3843 57088747 ~ 57196089 (+) False LOC110526195
XM_021606948.2 mRNA upstream 3843 57094817 ~ 57196089 (+) False LOC110526195
XM_021606946.2 mRNA upstream 3843 57094893 ~ 57196089 (+) True LOC110526195
XM_036980547.1 mRNA upstream 18825 57094812 ~ 57181107 (+) False LOC110526195
XM_021606942.2 mRNA upstream 239777 56954134 ~ 56960155 (+) True ndufs3
XM_021606949.2 mRNA downstream 61121 57262068 ~ 57277274 (+) True LOC110526197
XM_021606954.2 mRNA downstream 306985 57507932 ~ 57550725 (+) False LOC110526201
XM_021606957.2 mRNA downstream 306985 57507932 ~ 57550725 (+) False LOC110526201
XM_021606959.2 mRNA downstream 306985 57507932 ~ 57550725 (+) False LOC110526201
XM_021606955.2 mRNA downstream 307076 57508023 ~ 57550725 (+) False LOC110526201
TU593913 other upstream 1079198 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1283986 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1633433 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1715325 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2259059 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 375137 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 403161 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 420901 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 438527 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 502511 57703458 ~ 57710340 (+) True G525912

Expression Profile


TU595657 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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TU595657 Expression in each Bioproject

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TU595657 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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