RNA id: TU595743



Basic Information


Item Value
RNA id TU595743
length 224
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G525667
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57236848 ~ 57237071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGATGTCTCATGAGCCCACATCTGTCACTGCTAGGCCTGGGAAACTCAGTACAGAGTAAGTAAATAAGACATCATGGAATTTAGTTCTTACCAAATGACTTTGGACTCCTGTAAAGAAAGTCTATTGGGCTCAGTGAGCTCCCTCCTCATACTTCCTGTAATTCTATTGCACCTTGGAATTTTTCCAgtatgtattacattttttttacgtCCTTCTCCCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU595739 lncRNA upstream 3542 57233094 ~ 57233306 (+) True G525663
TU595659 lncRNA upstream 35022 57201656 ~ 57201826 (+) True G525583
TU595657 lncRNA upstream 35901 57199932 ~ 57200947 (+) True G525581
TU595703 lncRNA upstream 42864 57193774 ~ 57193984 (+) True G525627
TU595701 lncRNA upstream 68254 57168358 ~ 57168594 (+) True G525625
TU595747 lncRNA downstream 3594 57240665 ~ 57240883 (+) True G525671
TU595775 lncRNA downstream 40524 57277595 ~ 57278035 (+) True G525698
TU595719 lncRNA downstream 43536 57280607 ~ 57293416 (+) True G525643
TU595887 lncRNA downstream 192532 57429603 ~ 57432552 (+) True G525799
TU595730 lncRNA downstream 344741 57581812 ~ 57584090 (+) True G525654
XM_036980546.1 mRNA upstream 40759 57088747 ~ 57196089 (+) False LOC110526195
XM_021606948.2 mRNA upstream 40759 57094817 ~ 57196089 (+) False LOC110526195
XM_021606946.2 mRNA upstream 40759 57094893 ~ 57196089 (+) True LOC110526195
XM_036980547.1 mRNA upstream 55741 57094812 ~ 57181107 (+) False LOC110526195
XM_021606942.2 mRNA upstream 276693 56954134 ~ 56960155 (+) True ndufs3
XM_021606949.2 mRNA downstream 24997 57262068 ~ 57277274 (+) True LOC110526197
XM_021606954.2 mRNA downstream 270861 57507932 ~ 57550725 (+) False LOC110526201
XM_021606957.2 mRNA downstream 270861 57507932 ~ 57550725 (+) False LOC110526201
XM_021606959.2 mRNA downstream 270861 57507932 ~ 57550725 (+) False LOC110526201
XM_021606955.2 mRNA downstream 270952 57508023 ~ 57550725 (+) False LOC110526201
TU593913 other upstream 1116114 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1320902 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1670349 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1752241 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2295975 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 339013 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 367037 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 384777 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 402403 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 466387 57703458 ~ 57710340 (+) True G525912

Expression Profile