RNA id: TU595887


Basic Information

Item Value
RNA id TU595887
length 2929
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G525799
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57429603 ~ 57432552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATGCTGATGCAATTTTTTATATTTTGCTTGATACTAACTCTACTTACTAACACTACTATTAAAGAGACTGATACAGAAAGGCAATACAGAAAGGCTCCTGTGGCTTACCCAGAAACACATGCAATTTACTTGTACAGCCACAGTGTGAAAGGTCAGCAACTGGCCAGTTCCTTCCCAAAGGCGCCAGGTGAATaccaaaatacatttcaaatacaaaaatacatcCCCTTATTTACAGCAAAAGCATTCACTTTGTCTTATGTACAAAAGGGCACACATTACGAACGCCAACAAACACATGGAATGTTTGGTAAGATTTGCATCATTTCACTTTGAATTATAATAGCCTTGTAAAACCCCTCACACAGGTTCTGAAGCAGGTTTCTACCACACATTTGGGGGACTAATTACAAAAGATTGACCCTGGTTCAACCAGATAACTCAGTCTGACTTGATTTAGTGTGTTATGCATGATCCCAATGGTTTAGTGTGGACACAGTCATCAGAGAGCCTGTTCAAGATCAGCACATTGGACagactatagaatatagagtagcaGTCATTTATAACAGGTCCTGCTTTTAGACAACCTAAAGATGGTGTAGCAGGTAGGATAGAGGGGGCTGGAGTGGGTTGGGACAACTAAGCAACCATTTGATCAGTAAAAAGTGTGTTTATAGAAGGCAAGTGGGTGAGGGCTGGACAGCTTCCAGAGCATCTGGTTGAACCTTAGTTACACATCTATTAATCAAACGAAAGGACAAACATAGACAAACAGTATCTTGACAGGAAGCAATCTACATTttcaatatacacacattatcaGTGTACTCAGTTAACCAACTCTACATTTGTCAGGTAATGTGCACTAAGATATAAGACAGGCGACAACTAGGAAACAAAACCGACTTAGAAATTATATGGCTCTGATTAATAGGGTAGGTAGTGATTTTACAAACCATTTGACAGAAAATGAATAATGCAAATCTAATGACATGTTAGATGGAAGGATTGTGAGTCTGGCCTCCCCTGATTATACACAGACAAGACACAGTTGTGAATAAGCAAGTGAAATCTATGAAGAGCAACAGACTGGACGTTAAGCTAAGACTCCAAGGCCACTGGCTGACCCAGATCCTCCATGCCTCCTCCACAGAGCCTGGGCTGTCTACTCAAACCCTCCTGCCTAGCATTACGCAATCCCATTTAGCGTCAGTGGGGCCGCCCCACTCACTCCTTACacaatccctctctccctctctcgccctgaAACAACACAGCAGGAAGAGGAGGGAACACCAGAATATATTCTATTCAATGTAACAAGGTTCTTCACAACAAAAACGCTGCATGAAAATCTTTTTGTATTATTTTGCTGCTGGAGTGACTGTTTTTAAGAAGCATCATCAACAGAACAGTGTTCTTTAGAGTGAACAGTTTTTCTGGGCACTACTGTAAATCGTGATGcgattcttttttattttttttattttacccccagTGGATTCTGAACTTTGATATTCAATTTAAAATATACTCTATTTTCACATTCACAATGACATTAGGGCTGAATGGACTTTTGGCATAATGATGAtattcattcatttttttttgtggAGAAAAGGTATTCTCCTGGAGGTGTTTTGACTGTTTTTGTAAAGATGGGCAGTTTTGAGTCTTTTGGACTAGAGAAGGCTTTGCTCCAGTGAGGGAGTATTGTACACCCTTGGTAGGCATTTACACTGATTGTCcctgttcatgtttttttttcaatatATACACAACTTTCTTGATacagaaataaatacaaaaacagacAAACTGTGTAACAGTTAAGACAACAAGATCATGTAAACATGACGTCATAATTGATATTCATAAAAAGAAAAGTTCACAATATTTTTTTGCATAAAATAAATATGCTCTTTTTTGATGCCAATAATACGTATATATTACATATGATTTAGTTTGCATAAAGAGTCAAATAATAAAATGAACAACCCCATGTGGACGGCGTGAGAATACAAAAACTGAAAGAGTTTGAAGGCACTTATACCCATTAGCTTGCAATGTCGACCTGAAGGGGAAAAAAAAGTGCAATGCACACACAAGCTTAAACATTATGGGACAAAATGTGGTcaaatgtacaaaataaatgCCTTTGAAAGATGTATAATTCTAGCATGAGGCAATAGAGTGCATTTTAAGCGCTTTAAGCAAAAGGTAAAAGAGGACATTCTTTGGAATGTTTGTATTCAAACATTTGCATGACCAATTGTGAAGTAGGAGAGGGAATTTCTATAACAGAACAACTGGAATtataaataccccccccccccaccaccaccccacatcCCTATCCCCCTCACCCTCCTATCCAATTTGCTATAGATCCGCTATAGATCCCCCTACAGCTGAAGTACCCCCTGTGTTCTAAATATTTGTAGAAGTCCTTGAAAAAGCAACAGTGTGATGGAATCTGAGGAGCACTTCATCTGCACAGAAGCACTGCAACCACACTCACCCAGTTGAacgtgcagacagacacacatggcACACAGAGGTTTCAACAAGTTACTCAATTCCAACCCCTCTCACTCCCTGCTTCTGCCTCCAGTCAAACACAGCAGTCAGAGATGAAAAGTTCCTGTGAAGCTTTGATTGGAGTTGCCTGTCATTTCTATCTTCTTCACATACCCTCTTCATCCTCTCTATCAGGTGGGACTTCAGGGAATGGGATGGAACAGGAAGGCCAGGGAGCTACTGCAGGAGGTCAGGGAGTGCAGGGAGAGGTGGGTTGGGGATGGCACACTAGGGGGCGCCGTAGTGTCACTACACATCCACATGGGTAAGGAGTCTGGAGAGCCTGTGTTTTTGCCAGCTCCGCCCCTCAAGGTTAAAagtactcctctcctccttcggGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595719 lncRNA upstream 136187 57280607 ~ 57293416 (+) True G525643
TU595775 lncRNA upstream 151568 57277595 ~ 57278035 (+) True G525698
TU595747 lncRNA upstream 188720 57240665 ~ 57240883 (+) True G525671
TU595743 lncRNA upstream 192532 57236848 ~ 57237071 (+) True G525667
TU595739 lncRNA upstream 196297 57233094 ~ 57233306 (+) True G525663
TU595730 lncRNA downstream 149260 57581812 ~ 57584090 (+) True G525654
TU595732 lncRNA downstream 152966 57585518 ~ 57587316 (+) True G525656
TU595723 lncRNA downstream 160102 57592654 ~ 57594166 (+) True G525647
TU595731 lncRNA downstream 161849 57594401 ~ 57594669 (+) True G525655
TU595991 lncRNA downstream 249436 57681988 ~ 57682196 (+) True G525897
XM_021606949.2 mRNA upstream 152329 57262068 ~ 57277274 (+) True LOC110526197
XM_036980546.1 mRNA upstream 233514 57088747 ~ 57196089 (+) False LOC110526195
XM_021606954.2 mRNA downstream 75380 57507932 ~ 57550725 (+) False LOC110526201
XM_021606957.2 mRNA downstream 75380 57507932 ~ 57550725 (+) False LOC110526201
XM_021606959.2 mRNA downstream 75380 57507932 ~ 57550725 (+) False LOC110526201
XM_021606955.2 mRNA downstream 75471 57508023 ~ 57550725 (+) False LOC110526201
XM_021606956.2 mRNA downstream 75546 57508098 ~ 57550725 (+) False LOC110526201
TU593913 other upstream 1308869 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1513657 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1863104 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1944996 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2488730 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 143532 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 171556 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 189296 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 206922 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 270906 57703458 ~ 57710340 (+) True G525912

Expression Profile