RNA id: TU595721



Basic Information


Item Value
RNA id TU595721
length 2169
RNA type TUCP
GC content 0.47
exon number 13
gene id G525645
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57576084 ~ 57581070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgaTCAGGAACACACGTTTATTTCCAATATTACATCAGTTTGCATGTAGAGAAAATGAGATGAGAAGAAATAACaatcaatcatcatcatcaccgccTGTTTTGTCAATAACTTTCTTCATCCACCTTCTCATACGGAAAAGATGGGTGTAGAATCCATATTTCCCATCCCTGTCACATCCTTCTCCCCAGGACACAATGCCGATCTGATACCAACGGTTGTCATCTGGGTTCTGTGAATGAGGATACAAGTCATTCTCATGCGTATATCAAATATAAAGGGGAATATGCAAGACATCTAATGAGTGAAGTTCGTGTTTCTCTAGTTGTATACCTTCATGACAAAGGGACCACCGCTGTCCCCTTCACAAGCATCACCAGTTTTCTGTTCCTCTGGTTTGAAGCCAGCACAGAACATGTTGTCAGTGATGCGGATAGAGGTAGAGGCTCTGCAGATATCCTGTTCAACGATGGGTAGATGGATCTGCTGGAGAACTGTGGGTTGAGACTTGGGGGAGGAAGTCCATGTCTCATAAAGGTTCCCCCAGCCTGTCACACGGCCTTTATAGCCAGCAAACATCAGTGTCTTAGCAACCTGCTTGGTTGGTAGACAGACAGGATGAATCTCATCAGTGAAAGTAACGGGCCTCCTCATGTGCAGCAGAGCAATGTCCCGGTTCAGGTTCTCCTTCCAGTTGTACTTGGGGTGGACAATTATCTCATCAATGGCCACAATCTTCTCTGTGCCCTTCTCAAACTTAGCTCTGTTATGTTTGCCAAGACGGACCAGGATGTCATTGATGGTGAAGTTTTTGTTCCATGGTGGGTAGAGGATGCAGTGGGCTGCAGTGAGGATCCACTCATCACTGATTAGACTGGCCCCACACAGAAGCTCCTGGGGGCTTTTCTTGTACAACATCACCTGCCATGGTGCACTGGCCACCTCTGCATCAATCCCTTTAACAATACGGCCTCCTTGGTAGGAGTCAATCAGTTCTTGCTCTCTACCGTCCTTCTTACTTATCTTCTCAAACATGGGTCGCTCCCCGCACACCATCTCTCCACTGCCAAAGCTCCGAGGGCTGAAGAAGGTTTTTCTGGGCCCAGAGAGTGTTGTCCTTTCCCTTCCGCCAGCCGCCTCCTCATAGTTATCTATTGGGTCATCACACATGTCAAGGTCACAGTAGTCCACAGTGGTATTTCCATGCTGGTCCACAAAGCACCAGGGTCCCTCCATATCTCCGTCAGGGTTTCTACAGTGGTTCGCCACAAGTTTGACCTCTGGGATGAAATCCTTTCCTTTTCTGAGTGCCAATGCCTCTGGGGAGGCCCAAGGCAGACACTTTTGGCCGTTCATGGTAACTGAGAGATCCCCAGTATAATCCAAGCCATTGTTGGCCATGCAGTCCTTCTTGGTGTACGTGGCTTTCCCATCCACTGCAGCGGGTACTTTTGGGGGTACCCAAGGCTCCCCACATTTTGGAACGATACATTGCTCTCTCCTGACTGTGGGATCCCTGGTGAAGCACCAAGGTCCTTCAGGAGTTTTGTCTGGGTTCCTGCAATAGTTCTCATACAGGGTCTCATCCAGCAACGTATTGAACTCCGTAATTCTGTGTGGGAAGTTACTGGACCAGTACTGGCATGTTTTTCCTGAGGAAGTAGTGAAGATGGTGCCGTTGTAGTTCTCACCAATGCCCACTGAGCACCATCCATCGAGATGAATACACCCCCTCACTGTGTTTATATTGTCCTTGGTTCTCAGCAGTGAAGTGCCTTTGCAAGCCAAATAGTTGCCCCAAAAGGCCTTCGTCTTGTCAGGCTTTTCAAAGACTTCACGGGCTTCTTCATGGTCACAGATCTCCTCGATGCACTCCCGTTCCAAGTTCCCAGGTTTCAACTCCTCAAGGAAGGAATTTGCCCGTTTAGCACGGATAAAAACCTGTGAGGCCTCTTTGCTATTAAGAAATACATTTTCACAAAGTGTGATCTGAAGAGTAGAAGAAAATAGTAGAGTGAAAATGAGAGTTGCGGGTATTTGACCCATTCTTATGGATAGTTAAGACAGAACTCCTTGCAAAACCTAGGACATCACCAAACCTTCTCACCCCTTCAAAATCCAGTACTCATTGAAACACCCCACTTTCTGTTACATTGAATCCACCTGGTT

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU595887 lncRNA upstream 143532 57429603 ~ 57432552 (+) True G525799
TU595719 lncRNA upstream 282668 57280607 ~ 57293416 (+) True G525643
TU595775 lncRNA upstream 298049 57277595 ~ 57278035 (+) True G525698
TU595747 lncRNA upstream 335201 57240665 ~ 57240883 (+) True G525671
TU595743 lncRNA upstream 339013 57236848 ~ 57237071 (+) True G525667
TU595730 lncRNA downstream 742 57581812 ~ 57584090 (+) True G525654
TU595732 lncRNA downstream 4448 57585518 ~ 57587316 (+) True G525656
TU595723 lncRNA downstream 11584 57592654 ~ 57594166 (+) True G525647
TU595731 lncRNA downstream 13331 57594401 ~ 57594669 (+) True G525655
TU595991 lncRNA downstream 100918 57681988 ~ 57682196 (+) True G525897
XM_021606978.2 mRNA upstream 7611 57558525 ~ 57568473 (+) False atg13
XM_021606979.2 mRNA upstream 7611 57558525 ~ 57568473 (+) False atg13
XM_021606980.2 mRNA upstream 7611 57558525 ~ 57568473 (+) False atg13
XM_021606981.2 mRNA upstream 7611 57558525 ~ 57568473 (+) False atg13
XM_021606982.2 mRNA upstream 7611 57558525 ~ 57568473 (+) False atg13
XM_036981766.1 mRNA downstream 6523 57587593 ~ 57591339 (+) True LOC110526205
XM_021606991.2 mRNA downstream 40725 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA downstream 40727 57621797 ~ 57635241 (+) False fbxo3
XM_021606996.2 mRNA downstream 58367 57639437 ~ 57642487 (+) False LOC110526214
XM_021604991.2 mRNA downstream 63597 57644667 ~ 57647053 (+) True aplnr2
TU593913 other upstream 1455350 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1660138 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 2009585 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 2091477 55484249 ~ 55484607 (+) True G523529
TU592296 other upstream 2635211 54879699 ~ 54940873 (+) False LOC110526161
TU595951 other downstream 23038 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 40778 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 58404 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 122388 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 236754 57817824 ~ 57818280 (+) True G525972

Expression Profile