RNA id: TU595732


Basic Information

Item Value
RNA id TU595732
length 1799
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G525656
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57585518 ~ 57587316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAACACATTTCAGCGCTAATGTAAGCCCCTGACAAAACAATTAGCTAATGTAATCGAGTTTGTTCACTAACATAAGTTGGCCTGCTTAACTGGAAATAGTACACGTCGACAAGGGACCGTGAGTAAGTTTGTCAATGACTTCGTGACACAGGCAACAAATTATTATTAAGCACAAGCCAACTATTAACTGGCGagttagcaagctaactagctatggTTTCAGTAGATCGCTGGAACAGGCTTGAGTATATGTCAGAAATCTAGTAACAGTAGTTATTTAACTTGGTAGTTAGCTATTAACGAACGTTATCAACGCGTTTTTATTTATTATTGGTGGCACTGATTATGCTAACAAACTCAAACTAACGTTACTGTATTTGCGTTATGCATGCAACATTGTTGTCTGACTAACCAGTCGACGACAATGTGGACATGATACTACGCCGGTTGGGATATCAAACATCTTTCAAATAGACGTTCGATTCGCGGCAATAACTCGAAAATATTATTTCAATTAACTCAGGATTTCCACAGGTTCTTGGCCAATTTGTAGCATTATTTTTTTCCATTTGAAAACTCCGGGAAAATCATCGTTCTCCAGCCAAGGACAGAATCCGGAAGTCCTCAAGTTCCTGTCTTCCTAAACATTCCGACAGGAAACGTGTCCTTTCCCGCACATCGTAAATGCTATATTTATCCTAATTCGAATGGTTAGAAAGtcacatgataacatgatatatGCATGGGTCATTAGCTACCGTACTTTGCTGTTTTTGTTATTTCCCAACTAGCTAATTTACAACAGTTAATTTGTCAGCGGCAAGAGGAACTCATGCATGTTATCTCATAGAGCAAGCATCGTAGTCCCGTTTATGTTTTTGCCACTGCCAGACTGAAATTGAATGTCGAGTTTATTTTAAATACTTGGCCTAATTGTATTACCTGAGCCACCTGTATTCATGGACTGCCGTTATATTATGTTTTTTCTACCAACAGACCTGCCATGGTATGCTGAGGTGGGGAGTCTGGGGACCTATGCACTATGGCAGAGTcacttgccatccaggaccattCAACAGAAGCAGACCTATGCACTAAGTAGTAATATGAATCAATTTGGCCTAGTAGCCAGCAGATCCGACCCGCTTGCTTACAGCTGCAGACAGGCTAGGGTCGGTCAGGCTTCATGTGTAAATTAATACACCGCGGTGCCGGCGCGAGATATGGCTCTGGAAAAgtacctcaatccagggatgaCAAATGTGTTGTACTCCGAATTGTCCCATTATCCCAACTGTTACACAGAGAAGATTGAACGAATGCTCCTAGATCAATCGTTCAATATTCTCTCTGTAACAGTTGTGATAATGTGACAATTCGGAGTACAACGCATTTCTCATCCCTGTATTGAGGTATGTTTTgcaagtacttaagtaaaattaTTTTAAAGTATTACtaatgtattttttggggggtatctgtactttactttactatttttgacaacttttaacttttattacattcctaaagaaaaaaatgtactttttactcataCATTTCTCCTGAACACACAAAAgtacttattacattttgaatggctagcaggacaggaaaagtgTCAAATttatgcacttatcaagagaacatcctggGTCAtctctattgcctctgatctggcggactcactaaacacatgcttcgtttgttaattttgtctgagtgttggagtgtgcccctggctgtccttaaattaaaaaaaacaagaaaattgtgctgtctggtttgcttaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595730 lncRNA upstream 1428 57581812 ~ 57584090 (+) True G525654
TU595887 lncRNA upstream 152966 57429603 ~ 57432552 (+) True G525799
TU595719 lncRNA upstream 292102 57280607 ~ 57293416 (+) True G525643
TU595775 lncRNA upstream 307483 57277595 ~ 57278035 (+) True G525698
TU595747 lncRNA upstream 344635 57240665 ~ 57240883 (+) True G525671
TU595723 lncRNA downstream 5338 57592654 ~ 57594166 (+) True G525647
TU595731 lncRNA downstream 7085 57594401 ~ 57594669 (+) True G525655
TU595991 lncRNA downstream 94672 57681988 ~ 57682196 (+) True G525897
TU595997 lncRNA downstream 107316 57694632 ~ 57694840 (+) True G525903
TU595999 lncRNA downstream 107952 57695268 ~ 57695488 (+) True G525905
XM_021606982.2 mRNA upstream 17045 57558525 ~ 57568473 (+) False atg13
XM_036981766.1 mRNA downstream 277 57587593 ~ 57591339 (+) True LOC110526205
XM_021606991.2 mRNA downstream 34479 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA downstream 34481 57621797 ~ 57635241 (+) False fbxo3
XM_021606996.2 mRNA downstream 52121 57639437 ~ 57642487 (+) False LOC110526214
XM_021604991.2 mRNA downstream 57351 57644667 ~ 57647053 (+) True aplnr2
TU595721 other upstream 4448 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1464784 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1669572 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 2019019 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 2100911 55484249 ~ 55484607 (+) True G523529
TU595951 other downstream 16792 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 34532 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 52158 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 116142 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 230508 57817824 ~ 57818280 (+) True G525972

Expression Profile