RNA id: TU595723


Basic Information

Item Value
RNA id TU595723
length 1513
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G525647
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57592654 ~ 57594166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtctgtaaacaattgttggaaaatgtacttgtgtcatgcacaaagtagatgtcctaaccaacttgccaaaactatagtatgttaacaagacatttgtggagtggttaaaaaacaagttttaatgaccccaacctaagtgtatgtaaacttttgtcttcaactgtgtatacagtaccagtcaaaagttttagaacacctactcattcatgggtttttctttatttttactattttctacattgtagaataatagtgaagacatcaaaactatgaagtaacacatatggattcatgtagtatccaaaaaagtgttaataaatcaaaatgtattttatatttgagattcttcaaattgccaccctttgccttgatgacagctttgcaaactcttggcattctctcaaccagcttcatgaggtattcacctgaaatgcatttcaacttacaggtgtgccttcttaaaactgaatttgtggaatgtcgttccttaatgcgtttgagccaatcagttgtgttgtgacaaggtaggaggggtatacagaagatagcctatttggtaaaataccaagcccatattatggcaagaacatccatcattactttaagacatgaaggtcagtcaatcttgaaaatttcaagaactttgaaagtttcttcaagtgcagtcgcaaaaaccatcaagcgctatgatgaaactggctctcatgatgacTGCCACAGGAattgaagacccagagttacctctgctgcagaggataagttcattagagttaccagcctcagaaattgcagcccaaataaatgcttcacagatttacaacataaactgttcagaggagactgtgtgaatcaggctttcatggtcgaatttctgcaaagaaaccactactaaaggacactaataagaagaagagacttgcttgtgccaagaaacacgagcaatggatattagaccggtgtaaatgtgtcctttggtttggagtccaaattggaaatgtttggttccaaccaccgtgtctttgtgagacgcagtgtgggtgaacagctgatctccacatgtgtatttcccactgtaaagcatggaggaggaggtgttatggtgtggtgctttgctggtgacactgtctgtgatttatttagaattcaaggcacacttaaccagcatggctgccacaaCATTCTGcgcttagttggactatcatttgtttttcaataggacattgacccaacacacctccagtctgtgtaagggctatttgaccaagaaggagagtgatggaatgctgcatcagatgacctggcctccacaatcccacaacctcaaccaaattgagatgtttgggatgagtcggatggcagagttaaggaaaagcagccaacaaatgctcagcatatgtgggaactccttcaagactgttggaaaagcattccatgtgaagctggttgagagactgccaagagtgtgcaaaactgtcaaggcaaatggtggctatttgtagattctaaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595732 lncRNA upstream 5338 57585518 ~ 57587316 (+) True G525656
TU595730 lncRNA upstream 8564 57581812 ~ 57584090 (+) True G525654
TU595887 lncRNA upstream 160102 57429603 ~ 57432552 (+) True G525799
TU595719 lncRNA upstream 299238 57280607 ~ 57293416 (+) True G525643
TU595775 lncRNA upstream 314619 57277595 ~ 57278035 (+) True G525698
TU595731 lncRNA downstream 235 57594401 ~ 57594669 (+) True G525655
TU595991 lncRNA downstream 87822 57681988 ~ 57682196 (+) True G525897
TU595997 lncRNA downstream 100466 57694632 ~ 57694840 (+) True G525903
TU595999 lncRNA downstream 101102 57695268 ~ 57695488 (+) True G525905
TU596002 lncRNA downstream 104284 57698450 ~ 57698764 (+) True G525908
XM_036981766.1 mRNA upstream 1315 57587593 ~ 57591339 (+) True LOC110526205
XM_021606982.2 mRNA upstream 24181 57558525 ~ 57568473 (+) False atg13
XM_021606991.2 mRNA downstream 27629 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA downstream 27631 57621797 ~ 57635241 (+) False fbxo3
XM_021606996.2 mRNA downstream 45271 57639437 ~ 57642487 (+) False LOC110526214
XM_021604991.2 mRNA downstream 50501 57644667 ~ 57647053 (+) True aplnr2
XM_021606998.2 mRNA downstream 55766 57649932 ~ 57659929 (+) False psmc3
TU595721 other upstream 11584 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1471920 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1676708 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 2026155 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 2108047 55484249 ~ 55484607 (+) True G523529
TU595951 other downstream 9942 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 27682 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 45308 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 109292 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 223658 57817824 ~ 57818280 (+) True G525972

Expression Profile