RNA id: TU595951



Basic Information


Item Value
RNA id TU595951
length 397
RNA type TUCP
GC content 0.59
exon number 2
gene id G525861
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57604108 ~ 57606367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAAGGCTGTTGCCGCAGACAGGTGAAGGTTGCTGGCCGGATACTTGCAATTGGAATGCTCACAGCGAGGGCCCCCTTGCTGGTCTCTATACTGCATCTGTTTTGGTGGTTGAAGGTCGACCCAGCAGTCTGCGTTGGACATCATGCCCACATCAACCAGCTTGAACCTCATAACGCCGAGGTTGGTGTTCTGGGAGAAGCGGTCACAACTGTGCAGGGAGAGAGCCACTTCGCCCTCCACCTCATACCCTCCTGGCAGGGAGAACACCAATCCTTCCTCCCAGCGGGTGTGGCTGGTCAGGCGTCGCGACGAGGTCTGGGCCTCCCTCTGTCCTGCTGCAAAGGTCAGGACTCCGGCCACATAGCCCTCACAGCCCGACCCCACACACAAATGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU595731 lncRNA upstream 9439 57594401 ~ 57594669 (+) True G525655
TU595723 lncRNA upstream 9942 57592654 ~ 57594166 (+) True G525647
TU595732 lncRNA upstream 16792 57585518 ~ 57587316 (+) True G525656
TU595730 lncRNA upstream 20018 57581812 ~ 57584090 (+) True G525654
TU595887 lncRNA upstream 171556 57429603 ~ 57432552 (+) True G525799
TU595991 lncRNA downstream 75621 57681988 ~ 57682196 (+) True G525897
TU595997 lncRNA downstream 88265 57694632 ~ 57694840 (+) True G525903
TU595999 lncRNA downstream 88901 57695268 ~ 57695488 (+) True G525905
TU596002 lncRNA downstream 92083 57698450 ~ 57698764 (+) True G525908
TU596073 lncRNA downstream 204373 57810740 ~ 57810945 (+) True G525969
XM_036981766.1 mRNA upstream 12769 57587593 ~ 57591339 (+) True LOC110526205
XM_021606982.2 mRNA upstream 35635 57558525 ~ 57568473 (+) False atg13
XM_021606991.2 mRNA downstream 15428 57621795 ~ 57635241 (+) False fbxo3
XM_021606990.2 mRNA downstream 15430 57621797 ~ 57635241 (+) False fbxo3
XM_021606996.2 mRNA downstream 33070 57639437 ~ 57642487 (+) False LOC110526214
XM_021604991.2 mRNA downstream 38300 57644667 ~ 57647053 (+) True aplnr2
XM_021606998.2 mRNA downstream 43565 57649932 ~ 57659929 (+) False psmc3
TU595721 other upstream 23038 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1483374 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1688162 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 2037609 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 2119501 55484249 ~ 55484607 (+) True G523529
TU595733 other downstream 15481 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 33107 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 97091 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 211457 57817824 ~ 57818280 (+) True G525972
TU596687 other downstream 504539 58110906 ~ 58112819 (+) True G526547

Expression Profile