RNA id: TU595997



Basic Information


Item Value
RNA id TU595997
length 209
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G525903
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57694632 ~ 57694840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAATATTACCTCCCAAATCTACTACAGCTAATCCTACATGTTTCTACCCTGTGCTTTGATCTATGTAGGCAGATCCATCAACGAACAGCAACATGTCAGAGTCAATCAGAGGTTCAACAAACAAGTTTTTGTCCAGTACACATTCCTGGGCTGTCCAGATGTCCCTGTTATTGTTACTGATGATTTGCTCAGGGAAGCTCTCCAACAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU595991 lncRNA upstream 12436 57681988 ~ 57682196 (+) True G525897
TU595731 lncRNA upstream 99963 57594401 ~ 57594669 (+) True G525655
TU595723 lncRNA upstream 100466 57592654 ~ 57594166 (+) True G525647
TU595732 lncRNA upstream 107316 57585518 ~ 57587316 (+) True G525656
TU595730 lncRNA upstream 110542 57581812 ~ 57584090 (+) True G525654
TU595999 lncRNA downstream 428 57695268 ~ 57695488 (+) True G525905
TU596002 lncRNA downstream 3610 57698450 ~ 57698764 (+) True G525908
TU596073 lncRNA downstream 115900 57810740 ~ 57810945 (+) True G525969
TU596513 lncRNA downstream 135701 57830541 ~ 57830787 (+) True G526375
TU596524 lncRNA downstream 145671 57840511 ~ 57840853 (+) True G526386
XM_021606998.2 mRNA upstream 34703 57649932 ~ 57659929 (+) False psmc3
XM_021606999.2 mRNA upstream 34703 57649943 ~ 57659929 (+) True psmc3
XM_021604991.2 mRNA upstream 47579 57644667 ~ 57647053 (+) True aplnr2
XM_021606996.2 mRNA upstream 52145 57639437 ~ 57642487 (+) False LOC110526214
XM_021606990.2 mRNA upstream 59391 57621797 ~ 57635241 (+) False fbxo3
XM_021607001.2 mRNA downstream 18321 57713161 ~ 57716278 (+) True LOC110526217
XM_021607003.2 mRNA downstream 34604 57729444 ~ 57734935 (+) True LOC110526219
XM_021607002.2 mRNA downstream 49292 57744132 ~ 57760940 (+) True LOC110526218
XM_036980581.1 mRNA downstream 148154 57842994 ~ 57863756 (+) False LOC110526223
XM_036980583.1 mRNA downstream 148154 57842994 ~ 57863756 (+) False LOC110526223
TU595717 other upstream 52150 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 67013 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 88265 57604108 ~ 57606367 (+) True G525861
TU595721 other upstream 113562 57576084 ~ 57581070 (+) True G525645
TU593913 other upstream 1573898 56110279 ~ 56120734 (+) True LOC110526175
TU596007 other downstream 8618 57703458 ~ 57710340 (+) True G525912
TU596076 other downstream 122984 57817824 ~ 57818280 (+) True G525972
TU596687 other downstream 416066 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 577239 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 624080 58318920 ~ 58371968 (+) True LOC110526933

Expression Profile