RNA id: TU596073


Basic Information

Item Value
RNA id TU596073
length 206
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G525969
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57810740 ~ 57810945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttttaatcagggcaaggtgaccggaaacatgaccgaatacaaacagtgtaactattccctccgcaaggcaatcaaacaagctaagcgtcagtatagagacaaagtagaatcgcaattcaacggctcagacacaagaagtatgtggcagggtctacagtcaatcacggattacaaaaagaaaaccagcccagtcacggaccagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596002 lncRNA upstream 111976 57698450 ~ 57698764 (+) True G525908
TU595999 lncRNA upstream 115252 57695268 ~ 57695488 (+) True G525905
TU595997 lncRNA upstream 115900 57694632 ~ 57694840 (+) True G525903
TU595991 lncRNA upstream 128544 57681988 ~ 57682196 (+) True G525897
TU595731 lncRNA upstream 216071 57594401 ~ 57594669 (+) True G525655
TU596513 lncRNA downstream 19596 57830541 ~ 57830787 (+) True G526375
TU596524 lncRNA downstream 29566 57840511 ~ 57840853 (+) True G526386
TU596533 lncRNA downstream 40048 57850993 ~ 57851197 (+) True G526395
TU596550 lncRNA downstream 58555 57869500 ~ 57869702 (+) True G526411
TU596554 lncRNA downstream 61821 57872766 ~ 57873110 (+) True G526415
XM_021607002.2 mRNA upstream 49800 57744132 ~ 57760940 (+) True LOC110526218
XM_021607003.2 mRNA upstream 75805 57729444 ~ 57734935 (+) True LOC110526219
XM_021607001.2 mRNA upstream 94462 57713161 ~ 57716278 (+) True LOC110526217
XM_021606998.2 mRNA upstream 150811 57649932 ~ 57659929 (+) False psmc3
XM_021606999.2 mRNA upstream 150811 57649943 ~ 57659929 (+) True psmc3
XM_036980581.1 mRNA downstream 32049 57842994 ~ 57863756 (+) False LOC110526223
XM_036980583.1 mRNA downstream 32049 57842994 ~ 57863756 (+) False LOC110526223
XM_036980582.1 mRNA downstream 40782 57851727 ~ 57863756 (+) False LOC110526223
XM_021607009.2 mRNA downstream 40814 57851759 ~ 57863756 (+) True LOC110526223
XM_036980584.1 mRNA downstream 105400 57916345 ~ 57921070 (+) True fgf3
TU596007 other upstream 100400 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 168258 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 183121 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 204373 57604108 ~ 57606367 (+) True G525861
TU595721 other upstream 229670 57576084 ~ 57581070 (+) True G525645
TU596076 other downstream 6879 57817824 ~ 57818280 (+) True G525972
TU596687 other downstream 299961 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 461134 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 507975 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 967778 58778723 ~ 58779017 (+) True G527450

Expression Profile