RNA id: TU596586


Basic Information

Item Value
RNA id TU596586
length 1388
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G526447
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57943815 ~ 57945202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagcttggaaaattccagaaaattatgtcatggctttagaagcttctgataggctaatttacatcatttcagccaattggaggtgtatctgtggatgtatttcaatgcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaaaaaaattgtagacctccacaagtctggttcatcgttgggagcaatttccaaacgcctgaaggtaccacgttcatttgtacaaacaatagtatgcaagtataaccaccatgggaccacgtagccatcacactgctcaggaaggagacgtgttctatctcctagagatgaacgtactttggtgtgaaaagtgcaattcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatacccacagtaaattacataacctgaaaggcagctcagcaaggaagaagccacttctccaaaaccgccatagaaaaagccagactacatggggacaaagatcgtactttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgactatagttatgtttggaggaaaaagggggaattttgcaagccaaagaacaccatcccaaccatgaagcacggggtggcagcatcatgttgtgggggtgctttgctgcagaagggactggtgcacttcacaaaatagatggtatcataaggagggaaattatgtggatatattgaagcaacatctcaagacatcagttaaagcttggtcgcaaatgggtcttccaaatggacattgacccaagcatacttccaaagttgttgcaaaatggctaaaggacaacaaagtcaatgtattggagtgtccatgacaaagccctgacctcaatcgtatagaacatttgtgggcagaactgaaaaagcacgtacgagcaaggaggcctacaaacctgattcagttacaccagctctgtcaggaggaatgggccaaattcacccaacttattgtgggaagcttgtggaaggctacccaaaacgtttgacccaagttaaacaatttaaaggcaacactaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaatagaagctgaaattagtaattctctctactattattctgacattttacatttttaaaataaagtggtgatcctaactgacccaagacagggaatttttactcggattaaaggaatttaaatgtatttggctgagttCTATGTAAACATTCGACTCCAACTGTATTTGTAAATACTTATGTATTTGTacagcttttaaaaaaaataattaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596557 lncRNA upstream 68835 57874116 ~ 57874980 (+) True G526418
TU596555 lncRNA upstream 70447 57873168 ~ 57873368 (+) True G526416
TU596554 lncRNA upstream 70705 57872766 ~ 57873110 (+) True G526415
TU596550 lncRNA upstream 74113 57869500 ~ 57869702 (+) True G526411
TU596533 lncRNA upstream 92618 57850993 ~ 57851197 (+) True G526395
TU596601 lncRNA downstream 6331 57951533 ~ 57951744 (+) True G526462
TU596615 lncRNA downstream 37041 57982243 ~ 57982469 (+) True G526476
TU596630 lncRNA downstream 61036 58006238 ~ 58006461 (+) True G526491
TU596655 lncRNA downstream 90093 58035295 ~ 58040467 (+) True G526515
TU596652 lncRNA downstream 135801 58081003 ~ 58083393 (+) True G526512
XM_021607011.2 mRNA upstream 131 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 7549 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 22745 57916345 ~ 57921070 (+) True fgf3
XM_036980581.1 mRNA upstream 80059 57842994 ~ 57863756 (+) False LOC110526223
XM_036980583.1 mRNA upstream 80059 57842994 ~ 57863756 (+) False LOC110526223
XM_021607019.2 mRNA downstream 206638 58151840 ~ 58158582 (+) True LOC110526232
XM_036980591.1 mRNA downstream 273687 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 274352 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 274352 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 275094 58220296 ~ 58228939 (+) False LOC110526234
TU596076 other upstream 125535 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 233475 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 301333 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 316196 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 337448 57604108 ~ 57606367 (+) True G525861
TU596687 other downstream 165704 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 326877 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 373718 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 833521 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1826506 59771708 ~ 59772084 (+) True G528653

Expression Profile