RNA id: TU596615


Basic Information

Item Value
RNA id TU596615
length 227
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G526476
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 57982243 ~ 57982469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttggtacccttcctttctacggacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaaccgtgggaccttatatagacaggcgtttgcctctccaaatcatgtccaatcaattgaatttactacaggtggactccaatgaagttgtagaaacatatcaaggatgatcaatggaaacaggctgcacctgagctcaatttcgagtcacatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596601 lncRNA upstream 30499 57951533 ~ 57951744 (+) True G526462
TU596586 lncRNA upstream 37041 57943815 ~ 57945202 (+) True G526447
TU596557 lncRNA upstream 107263 57874116 ~ 57874980 (+) True G526418
TU596555 lncRNA upstream 108875 57873168 ~ 57873368 (+) True G526416
TU596554 lncRNA upstream 109133 57872766 ~ 57873110 (+) True G526415
TU596630 lncRNA downstream 23769 58006238 ~ 58006461 (+) True G526491
TU596655 lncRNA downstream 52826 58035295 ~ 58040467 (+) True G526515
TU596652 lncRNA downstream 98534 58081003 ~ 58083393 (+) True G526512
TU596676 lncRNA downstream 115461 58097930 ~ 58098176 (+) True G526536
TU596678 lncRNA downstream 118786 58101255 ~ 58101493 (+) True G526538
XM_021607011.2 mRNA upstream 38559 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 45977 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 61173 57916345 ~ 57921070 (+) True fgf3
XM_036980582.1 mRNA upstream 118487 57851727 ~ 57863756 (+) False LOC110526223
XM_021607019.2 mRNA downstream 169371 58151840 ~ 58158582 (+) True LOC110526232
XM_036980591.1 mRNA downstream 236420 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 237085 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 237085 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 237827 58220296 ~ 58228939 (+) False LOC110526234
TU596076 other upstream 163963 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 271903 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 339761 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 354624 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 375876 57604108 ~ 57606367 (+) True G525861
TU596687 other downstream 128437 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 289610 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 336451 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 796254 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1789239 59771708 ~ 59772084 (+) True G528653

Expression Profile