RNA id: TU596652


Basic Information

Item Value
RNA id TU596652
length 2391
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G526512
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58081003 ~ 58083393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGGACAGTTCCGAGGAGACATTCAGCGTGAACAAAGCTGACACAACAGATAACAAGATAACTTGCACTTACTTTGCTATTGTTGACAGTAATGGCCATCAGCAGACAAAACAAAAGGTGGGATGGGGCGGGATCGGGGGAATTTTTGGGGAAAGTCCGCTTGTTTGCTTTCCACATGGTTTCACACAAACTGTTGGCAAACAAACTCAATTAGACAACAAACAAAGGTTGACAAATGCATGTTGATAATAACAGAAAATGAGATGCATCATGCTCATTCATGCCCTTCAGTCACTACATTGACAAACTGGAAGCATGAATAAAACCACTCCAGTGTTGCCTCTGCTTATGATGTCAACCTCCACAGACACTTGTATTGGCAAGTATTTCCACCATGTTTAATGGCTAAGAAAAACACGTCATAACTTGAATCACCTCCAACTCCCACCGCTATACCTTGGATAACCTATGCTGTCCATTTGCACCTAGACGAGATGTCTCGCTAAATGAAGCGACGATGAGCAAAGGCGAAACAGAATGcaagacacacagagactcatCTCGGGCCATTTCTAAGACTCTTGGAAGCTCTCAATCAGTTCACTATAAAGACCGATTGAAGTCCAGACAGGGTCATTGTGATGCTACTGTACCAATTCCATATGAAACGAGTGCTCTTGTTTGTTATGACCTGAACCACCCTGTGATTGTATCAGAGACGCGTGGGCAAATAGAAAATGACCATGGGTGGCTGGGTCTGGTTGCTCTGCGTGCCCCAAGGGATGTAACACTGAAGAGGCCGGCTGAGGCTGACCacgaacaaaacaaaaacagctgATGTACTGTACAGTCCAACCACCCCCTACTGACTACCAGCCTCCCACCAGCAAACTTATTTTTGGTACAGCTGTGAACTCAGCAGCAGGGAGGGGCTGGGGGGTCAAAGGCCATTGTATGAGCAACTAATGAGTTTCATATAGAAAGGGAGAATGAGGTCAGTGCTCTGGGGAGATGGTGGCCTCCCGTTGAGAGAGAGTCACTGGGACTGGTCTAGGACTGGTCACCATCTTGTCACCGTCTGAGGCTGGGCACGCTTCATTCTCCCCCCACCGCTGACCCACATATCTGCTGGAGAGGAAACTCGTCAAGCATTGCATCAGGGTCAAGGAGGTGAGCTGCTGGTGGCAGGAGTTGGGGCGGTGTGTTGAGTTCCCCTCTAACTTGGTTCATATAGTCATATATAATCATGTTCACATTTCATGCTCCATAAGATACAGGCATACAAAACCAGAGGACGCATCGTTTGCGTTACTTTGCAATTAAACATATTGCCTTCATTAGAGGCCCTCGCTGCATTGGTATTAAGGGAACAGATTTGCTATGTGGTATCAATTATTAATtcatgtgtgaatatgtgtgcaTACTGGAAGCGAGTTTGATAAATACAGTCCTGCCTATGTTTATTGAAGGATATGATTAAAAAAAGACTTGTAGGCCACAATATGGCAAGTGCACTTCCCTCCGTAACTCTACATGCAATCATGTATATGAGTAGAttatttccaaaatgctatatCCACCCATTTTTCACATTGGtgtttttcatcagaaatgatcACATATGGTTTACCTCCACGTGTGTATATCTGACTGTCCTCAGATTTTCTTTGTTTCATTTATAGATGTGtatgaaaatgttttttgttgttgctcaacgctatatatccattgttCAGCTTGGAATAGAATGTTCGTATCCTGTACATTTGCCTGTGGTATGTGGTTGTATCACCAAAGCGACCTTAAGATGAACGCACTTAcggtaagttgctctggataatagcatctgctaaatgactcaaatgtcaaacGTTTAACTTACAGATCTGATGTCACTGTTTTGAATCTTTTCATTTGTTTCATGTTtttattgatgtcacaaatgtatcaattgtacagttctttatttaaaaaaaaaatgtagttatttgttacatttgactgtaaaacctagcagtactacttacTTCTCTGAGGCGGATACACACTGTACGCTgaaaatacaaaacattaagaatacccactctgtcacgaatattaccgaaggtgactccccttcttgttcgggtggcgctcggcggtcgtcgtcgccggtctactagctgccaccgatcctttgttctgtgttcgtttggttttgtctaattggtttcacctgtttcttgtttggttATTAGGGTGGGGTTATATAAGTTTGTTCAGCCTgcttctgtttgtgcgggcttgttcgtATGTATGTGTTCAAGTGGTTGTGTTTGCATTTCGGGTTTCTCGCTGTCCTTTATTTTTTTCACATTATTGTTCCTGTGATTTATtctggacattaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596655 lncRNA upstream 40536 58035295 ~ 58040467 (+) True G526515
TU596630 lncRNA upstream 74542 58006238 ~ 58006461 (+) True G526491
TU596615 lncRNA upstream 98534 57982243 ~ 57982469 (+) True G526476
TU596601 lncRNA upstream 129259 57951533 ~ 57951744 (+) True G526462
TU596586 lncRNA upstream 135801 57943815 ~ 57945202 (+) True G526447
TU596676 lncRNA downstream 14537 58097930 ~ 58098176 (+) True G526536
TU596678 lncRNA downstream 17862 58101255 ~ 58101493 (+) True G526538
TU596682 lncRNA downstream 21680 58105073 ~ 58105324 (+) True G526542
TU596684 lncRNA downstream 23132 58106525 ~ 58106737 (+) True G526544
TU596721 lncRNA downstream 61229 58144622 ~ 58146334 (+) True G526574
XM_021607011.2 mRNA upstream 137319 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 144737 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 159933 57916345 ~ 57921070 (+) True fgf3
XM_036980582.1 mRNA upstream 217247 57851727 ~ 57863756 (+) False LOC110526223
XM_021607019.2 mRNA downstream 68447 58151840 ~ 58158582 (+) True LOC110526232
XM_036980591.1 mRNA downstream 135496 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 136161 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 136161 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 136903 58220296 ~ 58228939 (+) False LOC110526234
TU596076 other upstream 262723 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 370663 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 438521 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 453384 57621848 ~ 57627619 (+) True fbxo3
TU595951 other upstream 474636 57604108 ~ 57606367 (+) True G525861
TU596687 other downstream 27513 58110906 ~ 58112819 (+) True G526547
TU596784 other downstream 188686 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 235527 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 695330 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1688315 59771708 ~ 59772084 (+) True G528653

Expression Profile