RNA id: TU596646


Basic Information

Item Value
RNA id TU596646
length 5912
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G526506
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58194139 ~ 58200097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCATGGATCGTTAACACACTCAACAGGAGGTGAACACACACCGCAAATGTATAAAACCTTCACGTTCTAcagcaaaacaaaataaaaacacacacggAATGTTATTCAAAGTACAAAAAAAGAAATCCTACGAAGTTGAAAGAAGAATTCGGAGAAAAAAAACGGCACATAATTAAACAAACTGAATGAATATTCAAAATAATCATGATAATCACACAGACGAATTAACTTTTTTATTTTCATCCCATCAATGTTAATAGGCGTGgtgaggtttaaaaaaaaaaaaaaaactactcaCTGAAGCATTACCCGGGTAGTAACTTTCACGCAACATTGCTGTAACGTTTTTAAAACATTTGTGAGATGTAACGCTGCGCCTAGTAggcttttagttgcctggttttcCAAGGACCTGGGAGGAGCAGTCTACCGTAAGTCAGTTGAGAGTTAATAGCGTGTGGTTTCAGTTGTTCAAGCTCAGCTGAGTGAGTAAGGTGAGATGCACTCTGGGATAGGGATGCACACCCACTGAGTGTGTGTCTGGAGTCGAGACTTCGACGACTCAACTGAAGTGCAATGATCATTTCCCCCGCCAACCTCTGGATCTTGACAGACATCAAACAGAGGATTGAGACATCGAACGCAGGGATCAAAATGAACCCCTTTCTCTTGACATCGTGTCATCTTTCTAACagatctctctttttctccacaAAGAGCAGTCTGGCATCCTGTGTGGTTGTTGattGCAATGAATAACAAAACCATTTTGTCAAGCTAGTGGTTAACCGTTAGACACAATATGAAGCAACTGTACAGGATGCCTGTGAAATGCACTGGCCACAAACAACAACTAACGGAATATATAGAACCAACATAGTCTGCTGGGTTCCTCTCTATCTTGGATACAAAACATCAGACCGCCTTGGCTGCTCTGCTCCCTCCCTGGCCATGACAGAGCTGCGGGGAGGGACAGAGTGGGATTGTGGGAGGAAGGAAGCATCCGGATCCTGGCCTAGGGCTCAGCCTGCCTTCCTGCTGGGCCGCAGCAATGACAGCATGGAGGACAATGCTGCACTTTGTGAGAGAGACCATTGTTACAGTCCCCCTGGGGCCAAGGCAGGGCCTAGACGGGCTGCAGAGAAGACCAGACGAGCGCAGAAGAGTAGAGTGGtgttgaacagagagagagagagcaagtagTGATACTGTAAGGCTAGAGTAAAGGTACTAGAGGCGACTACAGAGTAATAGCACTCGAAAAAAACTCACACCAAACACATACACAGAGGGTGTTGATACCTCAATCAATCCCTGACATAATATTTCATAACTGTATTTTTCATTGCTGTATTTTTCATTGCTGTATTTTTCTTAACTGTATTTTTCATTGCTGTAGTGTTCCAAACAATTCTCATGGAAAACAaaagaaaaaaggaaaaaaacaaaGCAGTCTTGGACTCAATCCCAGAGTGCTCTTATAAAGGCTCTAGTTGCCTTCAAGCAGGCAGTTTCTTTGTGAAATTTCCCACATTTCCGTTGCATCTGCTTGAGCTAGTTCTACGGCAGGCATCGTTGGGGACTACAGTGTCTTATTGGGGAGACGTCTCAGACACACCGAGAAACAGTTGGAAACTAAATCCACACTAAGAGACAGACATACTAGGAACACAAACAGCCACAAAGGTCTGGGACTCGCAGTGATAGTCTACTCCATACAGGCACAAAGACACTAGCTATCCCAGATAAAGAGAGAGCAAGTAAGGCATGGACTGGGTCTCAGACAATGAGTGAGCATTTTTTGAGTTTGTCCAGATACCTTCTAGGCCTGCTGATGGTGATTTTTCCATTGATTTGGAcaggatgggtgggtggatggggaCGGGTGGGGTAGtcaggggggagaagagagagggaaggcttTTACCTCTGATTAAGTCCCCTCTCAACCTCGCAGCACAATGAGAGGGCAATGGGCAGAGGCGGTCTCCTAGCAACCCCATCGAGCGGGGATCCATCACTGACACACGCAGGACCTCTCATGACAGTGATTCCTCTCCGCTGTCAATAATATTTATAATAGCCCTTTTAACTGGCCTTCCCCCATCTCAGTGGTATTATTGAAGCATCTCACGCATCCTCAGTGCACCTACCCCACCCCCGTCGATGCCCCAGACAAACATGTTCATCACAACTACTGTTTGACGGATGGTAAACAGTGAAAGCTGCCAGGTATCTGAGTGTAGGGAAATGACTTATCTCTACCTCACAGCAAATCCTTTCTCAGTATCTTTTGGGCTGCTAGTAAATCTACCAGACGTATGCATACTGTACATGCGCCTTTGTGGTCGAAGACAAGAGCATAGGGAATACATAACAATGTGAGAAAtaaagaagtttacatacactgcgTGCTACTATTTCCCTTTGGTATCAGAGAATAGACTCCACAGTTCCTTCTCTGGAGCTAGTGAATGTGGGTCACGGGATACAGTGCCAATAATAATCCTTACAGGAAGAGCCCCGCAGtgagctcctctccctcactccccctacTGCCTTACTCAGCTGTAGGAATGGACCTCTGGTCTCTCACTCAGCCTGCCTTGCAGCCTCCCCAACCCCCTCCAACAATCACCAACATCTGGGTAAAACAATCCAGGAACAGACTGTAAGACTTCCCAAACACTTAACAGATAAGGTTTCTGTCTTTGAACTCCCTATGTAGATTTCTAGCCTCTCACGCCCTCTCTcgttccccttctccctctggtAAAGTCTGTCTCTCCGTTTGGACCTCTCAGAAAATGAAAAGAAGCCTGGTTTGGTCCAGAGAAGGACTAAGATTATAGGCTGGAGGTTAACAATATTTTAAAACACCTGCTATTTTAAATGAGAGGATGTGCTGACATTTTCTGATTATGTTCAGAGGAATACTTCTCTAGACCAAgctcagagcgagagagagagagagagagagagagagagatagagagagagagagaaagccctcCAATCTATTTAAATCTAGGGGAGTAGGGTATTACAGAGAGAGGGCTCATTGTGTGGTGCATTACTTGAATTatatttattaaaacatttcaGGAGGCTGAAGTATCGCTGGTTCCAAGTATTTCTCAGATGAAAAGTGTCAGTCAATCTCTTACCTACTGGGCACAGACGTTATTTCAAACTCTAGTTTGATTTAtattttggttgagttgtcaactaacttcaattcaacatgaaatcaacaaaacatttcagcatgtcattcccagctagcacataatgttctgagaatcACATTTCTttgagcttggtgagagcgtggttgtcctctGGTTATTTTGCATAAAACCTTCCCAAaatgttctgggaatggtgcagggtACCCAGCTAGCTCATAAAGTTCTGAGAACCTTATATTTCTTAGGTTGGAATGTCAGTACTGTTTCCTATAGGTTTcatcatggttctatttaaagtaatgttctccaattgttcagagaacgttaagaaacaaagttcttctgtgggaatttcggTACTTCAGAATAACTTTTTCGACAGGTTTTCTCATGGTTCTATTGAAAGCTATGTTCTCAGAACGtccagagaacgttaagaaacaacgttcttccgtgggaatttcagtacttcagcataaagttttctgcaggtttcctcaAATTTCTATTTAAAGTAATCTTCTCAGAAACATTAATAAAAGGTTCCATAAAATCCCACAATAAAACATTAGTAACGTTCAAagaacgttctaagaatgttatttaaaaacatacattccgttctcagcatcAATGGACCTATAAGTCCATGGAGAGAGAGTAGAATATCATAAGTTCCTAAGAAGGtgaatttccatgtgtcctatctgtacatggagttcaaaacagttaacctaagATAGCAGTAGTATTAAAAGTCTTATTTCCAGAACtttatttaattaccttcaaataacctaCTATTTCCACCTTAGAACATTAATAAAACCTCacaggaaaactttcagggaaccatagtaaaacgttctcacaacctccctgcaacctacaaatgaacgttcccagaacaggcaaaatgttcacttccattctcagaacgtttaaaaGACATTCTGTTTTACTATTCAGGAAATGTTTGGCTTCTTTCCCAGAACCAATGGATAACCAAAAACGTCTGTTCCCACAAcctccaaggaaccaaatgtgctagctgggttggatttaggttaaaagtttggTGGAAAAATTTGTTTCCCTTACGTggtgactttttgcaaatccaatcatttTCCCACCTTGATTCAACATCCTCACATTGAAATGATGtgaaaacaacattgattcaatttGTTTATGCCCAGTGGATATTCGTTCAATACTCTCTCCTACCTCAGCACCTCAACTGCTCCTCCAAGTCCCACACAGAGGCATTTCACAGTGAATTGCCTTtgtcttaaaaaaataaaaaaaaaataggaaaGAAGCACCTTTCTTTTCCAACCCTTCCCTAATCATAACAACTCAAACTCTCATTACCACGGTTAATAGGACCGAAACAAGGTTAGAAATTAAAAAAAGGCACCACGGGACCATGTTTGGTTGAATGAGCCAAACGTTTGTGAAAGTTGTCTATAAAGTATGGACAAGATTTCCAATATCATCCATGGTGCCCTTGAATTAAAAACAGATGAGAAAACCAAAAGTTCAGTTAGTGGCTGTTCAACATGGAAGGTGTAGTGACAAAAGGCATTGGGTGAGTTGCAGTTCAAAAAGTGACACTATTTACACTGATCTCTCTCCTGTTGATACCTGACGTGCAGTAGGCCTGCTTCAGCTGTAGGAGtcctgagggaggaggaggtgggagggaggagtgggagagggatgggggggggctCTCTGCTTTTCACAGAATCAAACCTCCTTCACTCCCTTCATTCTgtgctgcagtctctctctctatcgctctgttAAGTCTCTGTTTTCCTTTCAAAGGCTAATCCAAGAACCAGATGGAAGTTATCTCAGAGAAACCCACTGTaacgggcagagagagagagagaataatgcaGACACTTCCTGGTTTAGAAAaaaagactcacacacacacaatatgaaccaaacaaaaacaaaaaacaatgtgCAAACTTTCTGATATAAATAGACTACAGTCAACTCATTGGGTAGAGCACCATGGGAGGGGAACGAGTTAGGTGTATGTGTTtatgtttgctgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgcgcgtgcgtcatgtgtgtgtatgtatttgcaCGTAAGTCTCTACTACCATGTTTTGGATGAGAAGATAGAGATAGAGGTATGAGGGTAGGGTTcaggttgtggggggggggggggggggtcattaagTGGGTCAGAGGTCACACCCAGTCCTGCATGGAGCGTTTGCAGTGGACCAGAAGTTTGGGAGTTCCTTTCCTCTTCAGTGTGTTGATGATGGCGTAGATCAGTCCCAGGATGCACAGCACCAGGACCAGGGGTACTGTCACCATGATGATGTTCATAGTGCGCGTCTCACTCTCGTCGATCTTCAGCACCACGTCCACCTCGttggtctcctcttctctctcgtcCTTATAGTCTACATCATTGGTACGGTCCTGATCCTTGTCCCGCTCCTTGTCCTTCTCCTTGTCCCGGCCTGCGTCAGGGTTGAAGGGCGGGCGATCCACTTCGGGGACCTTGCGGCCTGCGTCGgtatccctgtctctgtctgggtccaGGTCCACACTGCAGCCCATGAAGTCCCTCAGGATGGATTTAGGGTAGCCCGGCTCACTCTTCATCCTGTGGTTGTCAAACTTCCAGTATTTGGATCCCTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596738 lncRNA upstream 12350 58181586 ~ 58181789 (+) True G526591
TU596736 lncRNA upstream 13770 58180160 ~ 58180369 (+) True G526589
TU596729 lncRNA upstream 30082 58163745 ~ 58164057 (+) True G526582
TU596728 lncRNA upstream 34253 58159336 ~ 58159886 (+) True G526581
TU596721 lncRNA upstream 47805 58144622 ~ 58146334 (+) True G526574
TU596750 lncRNA downstream 6624 58206721 ~ 58207112 (+) True G526603
TU596751 lncRNA downstream 7269 58207366 ~ 58207600 (+) True G526604
TU596753 lncRNA downstream 9187 58209284 ~ 58209516 (+) True G526606
TU596754 lncRNA downstream 9906 58210003 ~ 58210304 (+) True G526607
TU596757 lncRNA downstream 10426 58210523 ~ 58210804 (+) True G526608
XM_021607019.2 mRNA upstream 35557 58151840 ~ 58158582 (+) True LOC110526232
XM_021607011.2 mRNA upstream 250455 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 257873 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 273069 57916345 ~ 57921070 (+) True fgf3
XM_021607009.2 mRNA upstream 330383 57851759 ~ 57863756 (+) True LOC110526223
XM_036980591.1 mRNA downstream 18792 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 19457 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 19457 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 20199 58220296 ~ 58228939 (+) False LOC110526234
XM_036980593.1 mRNA downstream 20199 58220296 ~ 58228939 (+) False LOC110526234
TU596687 other upstream 81320 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 375859 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 483799 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 551657 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 566520 57621848 ~ 57627619 (+) True fbxo3
TU596784 other downstream 71982 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 118823 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 578626 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1571611 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3771639 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile