RNA id: TU596751



Basic Information


Item Value
RNA id TU596751
length 235
lncRNA type intronic
GC content 0.53
exon number 1
gene id G526604
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58207366 ~ 58207600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCCAAAAGAATGGTTCTAAAATGGTTGGAGTGAAATGAAGGACAGCTATATTTGGCAAGTTTAGCAAATAGAGTTGACTTGGAGAGCTCGGGGCTTGGGTTGGGGCTCGAACTGTGGTTGGAGCTGGGGCTAGGGTTGAACCTGGGACTGGGGTTGGACCTGGGGCTAGGGTTGGACCTGGGGCTAGGGTTGAACCTGGGACTAGGGTTGAACCTGGGACTAGGGTTGAACCTG

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU596750 lncRNA upstream 254 58206721 ~ 58207112 (+) True G526603
TU596646 lncRNA upstream 7269 58194139 ~ 58200097 (+) True G526506
TU596738 lncRNA upstream 25577 58181586 ~ 58181789 (+) True G526591
TU596736 lncRNA upstream 26997 58180160 ~ 58180369 (+) True G526589
TU596729 lncRNA upstream 43309 58163745 ~ 58164057 (+) True G526582
TU596753 lncRNA downstream 1684 58209284 ~ 58209516 (+) True G526606
TU596754 lncRNA downstream 2403 58210003 ~ 58210304 (+) True G526607
TU596757 lncRNA downstream 2923 58210523 ~ 58210804 (+) True G526608
TU596758 lncRNA downstream 3520 58211120 ~ 58211334 (+) True G526609
TU596648 lncRNA downstream 10913 58218513 ~ 58219593 (+) True LOC110526234
XM_021607019.2 mRNA upstream 48784 58151840 ~ 58158582 (+) True LOC110526232
XM_021607011.2 mRNA upstream 263682 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 271100 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 286296 57916345 ~ 57921070 (+) True fgf3
XM_021607009.2 mRNA upstream 343610 57851759 ~ 57863756 (+) True LOC110526223
XM_036980591.1 mRNA downstream 11289 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 11954 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 11954 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 12696 58220296 ~ 58228939 (+) False LOC110526234
XM_036980593.1 mRNA downstream 12696 58220296 ~ 58228939 (+) False LOC110526234
TU596687 other upstream 94547 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 389086 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 497026 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 564884 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 579747 57621848 ~ 57627619 (+) True fbxo3
TU596784 other downstream 64479 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 111320 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 571123 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1564108 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3764136 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile