RNA id: TU596754



Basic Information


Item Value
RNA id TU596754
length 302
lncRNA type antisense_over
GC content 0.56
exon number 1
gene id G526607
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58210003 ~ 58210304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGCAAGTTCCCATTGCCGATGGTCCACGGCTCATCAGAGTCAAAGTGAGTATCACCACCCATACCAGGACCAGGGAAGTAGGCGTGGGCCAGGAACCCGCCCTCGCCATCGAAGGGTGAGCTGTCTCCATGGAAACCCGAGGCAAAGAAGATCATGATGTCAGGCTCCTTCCTGCGGCCATATTTGATCTCCTGGTAGGGGATCTCATCGAAGGTCAGCGGGGTCACCTTCTGCCACACCTTGAAGGCCCTACGGATGGCCTCATACGAGTTGTACTCCCCGATCTTTGGTGTGTAGTTCT

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU596753 lncRNA upstream 487 58209284 ~ 58209516 (+) True G526606
TU596751 lncRNA upstream 2403 58207366 ~ 58207600 (+) True G526604
TU596750 lncRNA upstream 2891 58206721 ~ 58207112 (+) True G526603
TU596646 lncRNA upstream 9906 58194139 ~ 58200097 (+) True G526506
TU596738 lncRNA upstream 28214 58181586 ~ 58181789 (+) True G526591
TU596757 lncRNA downstream 219 58210523 ~ 58210804 (+) True G526608
TU596758 lncRNA downstream 816 58211120 ~ 58211334 (+) True G526609
TU596648 lncRNA downstream 8209 58218513 ~ 58219593 (+) True LOC110526234
TU596651 lncRNA downstream 38749 58249053 ~ 58256834 (+) True G526511
TU596779 lncRNA downstream 56964 58267268 ~ 58267483 (+) True G526624
XM_021607019.2 mRNA upstream 51421 58151840 ~ 58158582 (+) True LOC110526232
XM_021607011.2 mRNA upstream 266319 57941240 ~ 57943684 (+) True fgf19
XM_021607014.2 mRNA upstream 273737 57928778 ~ 57936266 (+) True LOC110526226
XM_036980584.1 mRNA upstream 288933 57916345 ~ 57921070 (+) True fgf3
XM_021607009.2 mRNA upstream 346247 57851759 ~ 57863756 (+) True LOC110526223
XM_036980591.1 mRNA downstream 8585 58218889 ~ 58228939 (+) False LOC110526234
XM_021607025.2 mRNA downstream 9250 58219554 ~ 58228939 (+) False LOC110526234
XM_036980590.1 mRNA downstream 9250 58219554 ~ 58228939 (+) False LOC110526234
XM_036980592.1 mRNA downstream 9992 58220296 ~ 58228939 (+) False LOC110526234
XM_036980593.1 mRNA downstream 9992 58220296 ~ 58228939 (+) False LOC110526234
TU596687 other upstream 97184 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 391723 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 499663 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 567521 57639474 ~ 57642482 (+) True LOC110526214
TU595733 other upstream 582384 57621848 ~ 57627619 (+) True fbxo3
TU596784 other downstream 61775 58272079 ~ 58272836 (+) True G526628
TU596824 other downstream 108616 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 568419 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1561404 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3761432 61971736 ~ 61979527 (+) True LOC110526282

Expression Profile