RNA id: TU596797


Basic Information

Item Value
RNA id TU596797
length 1472
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G526640
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58285932 ~ 58287403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTTGCTTTATTATACAACTCCAAATATTCAGATCATTAGGCTATTCACATACAGACAGTGCTTTGAGGAAATTACTGTTTTCTGTTCTCTGCATGATGTTGAacagaccaacaacaacaaaaatatgtacACTATGGCCAAAACTTCACTGGGCCTCTCATTTGACAAGACCCCTTTTTTACCCTTTTAGTACATAAACGTCTTTAGACTGTACTTACAATGTGTGACAATTGGTACTGTGTTAAGACCAGACATGCAATTAGACATGTACTGTTAAAAGGCTTGTTGCGCGAGATGGGCAACAAAATCAAAGGGTACCCTGAGGGGAATGTGACAATGACCTATAGGTTAAAGGATTGAACAGATATACAAACACAAACAATCTGCAAAAAATGAGACTTAAGTTCAGTTATTTTATCTGATAAACCAACAAATAATAATCTTGTTACAAGATACCAAGTCAGACACTGCTGAACAGGACAATCCAAACTATGTTGAACATATAGTTTTGTACAATATGTACTTTACAAACAGGCTGTCAAAAGACGAGCTAGATTGTGGCACCACATAATAAccccacagagcagagagagggccAAAAGTCAtgacacaacatagaaaacgtaGCATCTAATATTGAACAAACTGTTTTCTGTGTGTTAGCTCAGTAGTTATCACTCATTATCGCTAGTGATGGGTCATAAACATGATCAAAGCAGATGAATCATCCACACAGCTATTCACTTTCATTGGTTTCTCTCCAACACTATTGTTTCTATCATTTGACTGTCACAGAAGCTTCCTCTaatcaaacatttatttaacatcAACTTCAGAGGTAGCATCACTCTGATTGAATACTCAAGAGTTAACAAAGGCATGGACAGGTGTGTCCCCAACATGGATCTCTATGGATATAGATGAGTCATTGCAGCTGTTCTGATGAAATTAGGAATCTCAGGTTCTCCAATGTATATTCACTCTGACTGACCGTGGTCTGTATTAGACTTGAGTGAGTATAGATTAGATTTGGTTAGGGTTCCTCAGCTCTTCACTCCAAGGCTCCAGTCTCAATTGACATTTGAGTCTCAATTGACATTTGATACATTTGGTTAGGGGCCTTTCACTACACAACCACCATTCTAATAACCATCCATCCACCTTCAGTGAGACATCTGTGAGGGGCCACGATTGGTGGCAATGGACATCATACCAAGGGTGGTAGCTACCAGGGAAGCTGCGTGTTCCCCTAAACAGGTACAGGTGTCCAGTAGGGAACGTGTGCGAGCGGTCAGTGTCAGAGAGGCAGAGATGACCTCATAGGCCTCCAGGGGAAGGGCCCGCCGTGAGATGAGCACATCCAGTAGGTTGTTGAGTCGTCCCTCCGTCATGCCTCGAATGATGCCCTCACGCCTCTCGCGCAGGATACGACAACAGCTCACCGCCATCGGAGTCGGAGACACACACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596796 lncRNA upstream 245 58285376 ~ 58285687 (+) True G526639
TU596782 lncRNA upstream 14455 58270629 ~ 58271477 (+) True G526627
TU596780 lncRNA upstream 17982 58267668 ~ 58267950 (+) True G526625
TU596779 lncRNA upstream 18449 58267268 ~ 58267483 (+) True G526624
TU596651 lncRNA upstream 29098 58249053 ~ 58256834 (+) True G526511
TU596798 lncRNA downstream 4831 58292234 ~ 58292573 (+) True G526641
TU596805 lncRNA downstream 17093 58304496 ~ 58304738 (+) True G526648
TU596806 lncRNA downstream 17877 58305280 ~ 58305599 (+) True G526649
TU597166 lncRNA downstream 122715 58410118 ~ 58410438 (+) True G526991
TU597170 lncRNA downstream 124938 58412341 ~ 58412592 (+) True G526995
XM_021607033.2 mRNA upstream 22283 58260503 ~ 58263649 (+) True LOC110526238
XM_021607031.2 mRNA upstream 42355 58236260 ~ 58243577 (+) True LOC110526235
XM_021607030.2 mRNA upstream 42356 58236260 ~ 58243576 (+) False LOC110526235
XM_036980586.1 mRNA upstream 49793 58228407 ~ 58236139 (+) True LOC110526233
XM_036980589.1 mRNA upstream 56993 58222156 ~ 58228939 (+) False LOC110526234
XM_036980595.1 mRNA downstream 56742 58344145 ~ 58408967 (+) False LOC110526933
XM_036980596.1 mRNA downstream 167045 58454448 ~ 58505295 (+) True LOC110526241
XM_036980598.1 mRNA downstream 353251 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA downstream 353251 58640654 ~ 58732690 (+) False LOC110526245
XM_036980601.1 mRNA downstream 353251 58640654 ~ 58732690 (+) False LOC110526245
TU596784 other upstream 13096 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 173113 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 467652 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 575592 57703458 ~ 57710340 (+) True G525912
TU595717 other upstream 643450 57639474 ~ 57642482 (+) True LOC110526214
TU596824 other downstream 31517 58318920 ~ 58371968 (+) True LOC110526933
TU597653 other downstream 491320 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1484305 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3684333 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3862370 62149773 ~ 62152218 (+) True G531406

Expression Profile