RNA id: TU597170


Basic Information

Item Value
RNA id TU597170
length 252
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G526995
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58412341 ~ 58412592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAGTGCGACGGGATAGACTGACACGGCATCCGTGCCTTGCCTGTGGTTCGACTGTTCTTCGGTATTACGACATTGCGAGAGCATCACCAGGTGATGCTTATCAGCTGATACCAGAATGCGTGACTAGAGAGTGTTCACAGACGGAACGTTCTTCGTGGCTTCAAGCAGATCTCTGATTCTCAAGTCTTCAGGCTACTCACTCAACCAATGTGTCCAAGCCACTGTTTCTCCTCCTACCTATCCACTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597166 lncRNA upstream 1903 58410118 ~ 58410438 (+) True G526991
TU596806 lncRNA upstream 106742 58305280 ~ 58305599 (+) True G526649
TU596805 lncRNA upstream 107603 58304496 ~ 58304738 (+) True G526648
TU596798 lncRNA upstream 119768 58292234 ~ 58292573 (+) True G526641
TU596797 lncRNA upstream 124938 58285932 ~ 58287403 (+) True G526640
TU597196 lncRNA downstream 19310 58431902 ~ 58432180 (+) True G527020
TU597204 lncRNA downstream 24027 58436619 ~ 58436823 (+) True G527028
TU597253 lncRNA downstream 97081 58509673 ~ 58510015 (+) True G527075
TU597254 lncRNA downstream 97616 58510208 ~ 58510632 (+) True G527076
TU597284 lncRNA downstream 98946 58511538 ~ 58511760 (+) True G527104
XM_036980595.1 mRNA upstream 3374 58344145 ~ 58408967 (+) False LOC110526933
XM_021607033.2 mRNA upstream 148692 58260503 ~ 58263649 (+) True LOC110526238
XM_021607031.2 mRNA upstream 168764 58236260 ~ 58243577 (+) True LOC110526235
XM_021607030.2 mRNA upstream 168765 58236260 ~ 58243576 (+) False LOC110526235
XM_036980586.1 mRNA upstream 176202 58228407 ~ 58236139 (+) True LOC110526233
XM_036980596.1 mRNA downstream 41856 58454448 ~ 58505295 (+) True LOC110526241
XM_036980598.1 mRNA downstream 228062 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA downstream 228062 58640654 ~ 58732690 (+) False LOC110526245
XM_036980601.1 mRNA downstream 228062 58640654 ~ 58732690 (+) False LOC110526245
XM_036980602.1 mRNA downstream 228062 58640654 ~ 58732690 (+) False LOC110526245
TU596824 other upstream 40373 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 139505 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 299522 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 594061 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 702001 57703458 ~ 57710340 (+) True G525912
TU597653 other downstream 366131 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1359116 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3559144 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3737181 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4407828 62820420 ~ 62822616 (+) True G532259

Expression Profile