RNA id: TU597284


Basic Information

Item Value
RNA id TU597284
length 223
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G527104
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58511538 ~ 58511760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATCCCATTCATGCAAATAGAGCTACTTTCCATAGCAGCCTGTCACATTGCAGTTTAGGCTTCATTCAAATGTGCACTGATAACATCGGTGTATGTTAATACCAATGTGTTGTCACTACATGATTCACATACTGGAGTTAAAATGAGGATGTACCACGGATGTTTTTCTGTGCTTTGCGTGACATGAGGATGTCCTGAAATATGTAAATGTATGTTATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU597254 lncRNA upstream 906 58510208 ~ 58510632 (+) True G527076
TU597253 lncRNA upstream 1523 58509673 ~ 58510015 (+) True G527075
TU597204 lncRNA upstream 74715 58436619 ~ 58436823 (+) True G527028
TU597196 lncRNA upstream 79358 58431902 ~ 58432180 (+) True G527020
TU597170 lncRNA upstream 98946 58412341 ~ 58412592 (+) True G526995
TU597285 lncRNA downstream 178 58511938 ~ 58512177 (+) True G527105
TU597294 lncRNA downstream 16361 58528121 ~ 58581884 (+) True G527113
TU597339 lncRNA downstream 86052 58597812 ~ 58600119 (+) True G527157
TU597596 lncRNA downstream 228740 58740500 ~ 58740805 (+) True G527393
TU597647 lncRNA downstream 261592 58773352 ~ 58773630 (+) True G527444
XM_036980596.1 mRNA upstream 6243 58454448 ~ 58505295 (+) True LOC110526241
XM_036980595.1 mRNA upstream 102571 58344145 ~ 58408967 (+) False LOC110526933
XM_021607033.2 mRNA upstream 247889 58260503 ~ 58263649 (+) True LOC110526238
XM_021607031.2 mRNA upstream 267961 58236260 ~ 58243577 (+) True LOC110526235
XM_021607030.2 mRNA upstream 267962 58236260 ~ 58243576 (+) False LOC110526235
XM_036980598.1 mRNA downstream 128894 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA downstream 128894 58640654 ~ 58732690 (+) False LOC110526245
XM_036980601.1 mRNA downstream 128894 58640654 ~ 58732690 (+) False LOC110526245
XM_036980602.1 mRNA downstream 128894 58640654 ~ 58732690 (+) False LOC110526245
XM_036980603.1 mRNA downstream 128894 58640654 ~ 58732690 (+) False LOC110526245
TU596824 other upstream 139570 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 238702 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 398719 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 693258 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 801198 57703458 ~ 57710340 (+) True G525912
TU597653 other downstream 266963 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1259948 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3459976 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3638013 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4308660 62820420 ~ 62822616 (+) True G532259

Expression Profile