RNA id: TU597596



Basic Information


Item Value
RNA id TU597596
length 306
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G527393
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 58740500 ~ 58740805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attttcgaAAGGGGctgtacatttgggtgagtttttttccctcgcctgagtagcctcgtttctgtcacgtgtgctccctgtccggcctctaggtcaccaggctgctcgttacggcgcacacctgtcaccatcgttacgcgcatcagcacattatgacactcacctggactccatcacctccttgattacctgccctatacatgtcactccctttggttcctttccCAGGTGTCATTGTTTCTGTGTTACGTCTGTGCGTTGTTTGagttttcttgttttgtattattttattaaaacactcagtCC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU597339 lncRNA upstream 140381 58597812 ~ 58600119 (+) True G527157
TU597294 lncRNA upstream 158616 58528121 ~ 58581884 (+) True G527113
TU597285 lncRNA upstream 228323 58511938 ~ 58512177 (+) True G527105
TU597284 lncRNA upstream 228740 58511538 ~ 58511760 (+) True G527104
TU597254 lncRNA upstream 229868 58510208 ~ 58510632 (+) True G527076
TU597647 lncRNA downstream 32547 58773352 ~ 58773630 (+) True G527444
TU597649 lncRNA downstream 34453 58775258 ~ 58775494 (+) True G527446
TU597650 lncRNA downstream 35878 58776683 ~ 58777182 (+) True G527447
TU597654 lncRNA downstream 38564 58779369 ~ 58779600 (+) True G527451
TU597655 lncRNA downstream 39779 58780584 ~ 58783386 (+) True G527452
XM_036980598.1 mRNA upstream 7810 58640654 ~ 58732690 (+) False LOC110526245
XM_036980599.1 mRNA upstream 7810 58640654 ~ 58732690 (+) False LOC110526245
XM_036980601.1 mRNA upstream 7810 58640654 ~ 58732690 (+) False LOC110526245
XM_036980602.1 mRNA upstream 7810 58640654 ~ 58732690 (+) False LOC110526245
XM_036980603.1 mRNA upstream 7810 58640654 ~ 58732690 (+) False LOC110526245
XM_036980609.1 mRNA downstream 73678 58814483 ~ 59000538 (+) True LOC110526935
XM_036980612.1 mRNA downstream 602314 59343119 ~ 59376681 (+) True tshz3b
LOC118965037 mRNA downstream 1102823 59843628 ~ 59847586 (+) True LOC118965037
XM_021607061.2 mRNA downstream 1110357 59851162 ~ 59861646 (+) True LOC110526256
XM_036980620.1 mRNA downstream 1426700 60167505 ~ 60175549 (+) True LOC110526261
TU596824 other upstream 368532 58318920 ~ 58371968 (+) True LOC110526933
TU596784 other upstream 467664 58272079 ~ 58272836 (+) True G526628
TU596687 other upstream 627681 58110906 ~ 58112819 (+) True G526547
TU596076 other upstream 922220 57817824 ~ 57818280 (+) True G525972
TU596007 other upstream 1030160 57703458 ~ 57710340 (+) True G525912
TU597653 other downstream 37918 58778723 ~ 58779017 (+) True G527450
TU598912 other downstream 1030903 59771708 ~ 59772084 (+) True G528653
TU601664 other downstream 3230931 61971736 ~ 61979527 (+) True LOC110526282
TU601786 other downstream 3408968 62149773 ~ 62152218 (+) True G531406
TU602760 other downstream 4079615 62820420 ~ 62822616 (+) True G532259

Expression Profile